miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31799_mmu-mir-28:mirbase
Length = 86
Score = 131 bits (66), Expect = 9e-32
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 1 ggtccctacccgcaaggagctcacagtctattgagttccttttctgattctcccactaga 60
|||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 1 ggtccctaccttcaaggagctcacagtctattgagttgcctttctgattctcccactaga 60
Query: 61 ttgtgagctcctggagggcaggcact 86
||||||||| ||||||||||||||||
Sbjct: 61 ttgtgagctgctggagggcaggcact 86
>30776_ppy-mir-28:mirbase
Length = 86
Score = 123 bits (62), Expect = 2e-29
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 13 caaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcct 72
||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||
Sbjct: 13 caaggagctcacagtctattgagttacctttctgattttcccactagattgtgagctcct 72
Query: 73 ggagggcaggcact 86
||||||||||||||
Sbjct: 73 ggagggcaggcact 86
>26968_eca-mir-28:mirbase
Length = 86
Score = 115 bits (58), Expect = 5e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 13 caaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcct 72
||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||||||
Sbjct: 13 caaggagctcacagtctattgagttgcctttctgactttcccactagattgtgagctcct 72
Query: 73 ggagggcaggcact 86
||||||||||||||
Sbjct: 73 ggagggcaggcact 86
>26969_eca-mir-28:mirbase
Length = 86
Score = 115 bits (58), Expect = 5e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 13 caaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcct 72
||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||||||
Sbjct: 13 caaggagctcacagtctattgagttgcctttctgactttcccactagattgtgagctcct 72
Query: 73 ggagggcaggcact 86
||||||||||||||
Sbjct: 73 ggagggcaggcact 86
>27492_age-mir-28:mirbase
Length = 86
Score = 115 bits (58), Expect = 5e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 13 caaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcct 72
||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||||||
Sbjct: 13 caaggagctcacagtctattgagttgcctttctgactttcccactagattgtgagctcct 72
Query: 73 ggagggcaggcact 86
||||||||||||||
Sbjct: 73 ggagggcaggcact 86
>27552_lla-mir-28:mirbase
Length = 86
Score = 115 bits (58), Expect = 5e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 13 caaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcct 72
||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||||||
Sbjct: 13 caaggagctcacagtctattgagttgcctttctgactttcccactagattgtgagctcct 72
Query: 73 ggagggcaggcact 86
||||||||||||||
Sbjct: 73 ggagggcaggcact 86
>28188_mne-mir-28:mirbase
Length = 86
Score = 115 bits (58), Expect = 5e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 13 caaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcct 72
||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||||||
Sbjct: 13 caaggagctcacagtctattgagtttcctttctgactttcccactagattgtgagctcct 72
Query: 73 ggagggcaggcact 86
||||||||||||||
Sbjct: 73 ggagggcaggcact 86
>28274_ggo-mir-28:mirbase
Length = 86
Score = 115 bits (58), Expect = 5e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 13 caaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcct 72
||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||||||
Sbjct: 13 caaggagctcacagtctattgagttacctttctgactttcccactagattgtgagctcct 72
Query: 73 ggagggcaggcact 86
||||||||||||||
Sbjct: 73 ggagggcaggcact 86
>28385_hsa-mir-28:mirbase
Length = 86
Score = 115 bits (58), Expect = 5e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 13 caaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcct 72
||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||||||
Sbjct: 13 caaggagctcacagtctattgagttacctttctgactttcccactagattgtgagctcct 72
Query: 73 ggagggcaggcact 86
||||||||||||||
Sbjct: 73 ggagggcaggcact 86
>28386_hsa-mir-28:mirbase
Length = 86
Score = 115 bits (58), Expect = 5e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 13 caaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcct 72
||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||||||
Sbjct: 13 caaggagctcacagtctattgagttacctttctgactttcccactagattgtgagctcct 72
Query: 73 ggagggcaggcact 86
||||||||||||||
Sbjct: 73 ggagggcaggcact 86
>30061_ppa-mir-28:mirbase
Length = 86
Score = 115 bits (58), Expect = 5e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 13 caaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcct 72
||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||||||
Sbjct: 13 caaggagctcacagtctattgagttacctttctgactttcccactagattgtgagctcct 72
Query: 73 ggagggcaggcact 86
||||||||||||||
Sbjct: 73 ggagggcaggcact 86
>30171_ptr-mir-28:mirbase
Length = 86
Score = 115 bits (58), Expect = 5e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 13 caaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcct 72
||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||||||
Sbjct: 13 caaggagctcacagtctattgagttacctttctgactttcccactagattgtgagctcct 72
Query: 73 ggagggcaggcact 86
||||||||||||||
Sbjct: 73 ggagggcaggcact 86
>27675_mml-mir-28:mirbase
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 13 caaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcct 72
||||||||||||||||||||||||| | ||| ||| | ||||||||||||||||||||||
Sbjct: 13 caaggagctcacagtctattgagtttcctttgtgactttcccactagattgtgagctcct 72
Query: 73 ggagggcaggcact 86
||||||||||||||
Sbjct: 73 ggagggcaggcact 86
>33157_bta-mir-28:mirbase
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 13 caaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcct 72
||||||||||||||||||||||||| | ||||||| | ||||||||||||| ||||||||
Sbjct: 13 caaggagctcacagtctattgagttgcctttctgactttcccactagattgagagctcct 72
Query: 73 ggagggcaggcact 86
||||||||||||||
Sbjct: 73 ggagggcaggcact 86
>27600_sla-mir-28:mirbase
Length = 86
Score = 99.6 bits (50), Expect = 3e-22
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 13 caaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcct 72
||||||||||||||||||||||||| | ||||| | | |||||||||||||| |||||||
Sbjct: 13 caaggagctcacagtctattgagttgcctttctaactttcccactagattgtaagctcct 72
Query: 73 ggagggcaggcact 86
||||||||||||||
Sbjct: 73 ggagggcaggcact 86
>26647_cfa-mir-28:mirbase
Length = 62
Score = 91.7 bits (46), Expect = 8e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 14 aaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcctg 73
|||||||||||||||||||||||| | ||||||| | |||||||||||||||||||||||
Sbjct: 1 aaggagctcacagtctattgagttgcctttctgactttcccactagattgtgagctcctg 60
Query: 74 ga 75
||
Sbjct: 61 ga 62
>33933_ssc-mir-28:mirbase
Length = 86
Score = 91.7 bits (46), Expect = 8e-20
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 13 caaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcct 72
||||||||||||| ||||||||||| | |||||| | |||||||||||||||||||||
Sbjct: 13 caaggagctcacactctattgagttgcctttctgtcttccccactagattgtgagctcct 72
Query: 73 ggagggcaggcact 86
||||||||||||||
Sbjct: 73 ggagggcaggcact 86
>33934_ssc-mir-28:mirbase
Length = 86
Score = 91.7 bits (46), Expect = 8e-20
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 13 caaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcct 72
||||||||||||| ||||||||||| | |||||| | |||||||||||||||||||||
Sbjct: 13 caaggagctcacactctattgagttgcctttctgtcttccccactagattgtgagctcct 72
Query: 73 ggagggcaggcact 86
||||||||||||||
Sbjct: 73 ggagggcaggcact 86
>27055_eca-mir-151:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 28 actagactgtgagctcctcgagggcagg 1
>27760_mml-mir-151:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 31 actagactgtgagctcctcgagggcagg 4
>27761_mml-mir-151:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 31 actagactgtgagctcctcgagggcagg 4
>28475_hsa-mir-151:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 31 actagactgtgagctcctcgagggcagg 4
>28476_hsa-mir-151:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 31 actagactgtgagctcctcgagggcagg 4
>30246_ptr-mir-151:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 31 actagactgtgagctcctcgagggcagg 4
>30859_ppy-mir-151:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 31 actagactgtgagctcctcgagggcagg 4
>30860_ppy-mir-151:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 31 actagactgtgagctcctcgagggcagg 4
>31801_mmu-mir-28c:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 aggagctcacagtctattga 34
||||||||||||||||||||
Sbjct: 45 aggagctcacagtctattga 64
>31886_mmu-mir-151:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 28 actagactgtgagctcctcgagggcagg 1
>31887_mmu-mir-151:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 28 actagactgtgagctcctcgagggcagg 1
>32758_rno-mir-151:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 36 actagactgtgagctcctcgagggcagg 9
>33084_rno-mir-3586:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 62 actagactgtgagctcctcgagggcagg 89
>33085_rno-mir-3586:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 62 actagactgtgagctcctcgagggcagg 89
>33238_bta-mir-151:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 28 actagactgtgagctcctcgagggcagg 1
>34001_ssc-mir-151:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 32 actagactgtgagctcctcgagggcagg 5
>34002_ssc-mir-151:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 55 actagattgtgagctcctggagggcagg 82
|||||| ||||||||||| |||||||||
Sbjct: 32 actagactgtgagctcctcgagggcagg 5
>28477_hsa-mir-151b:mirbase
Length = 96
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 56 ctagattgtgagctcctggagggcagg 82
||||| ||||||||||| |||||||||
Sbjct: 79 ctagactgtgagctcctcgagggcagg 53
