miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00917;mir-708;AAHX01070100.1/15768-15688 10116:Rattus
norvegicus (Norway rat)
Length = 81
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 3 tccctacccgcaaggagctcacagtctattgagttccttttctgattctcccactagatt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 tccctacccgcaaggagctcacagtctattgagttccttttctgattctcccactagatt 22
Query: 63 gtgagctcctggagggcaggc 83
|||||||||||||||||||||
Sbjct: 21 gtgagctcctggagggcaggc 1
>RF00655;mir-28;ABRQ01069155.1/829-914 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 115 bits (58), Expect = 9e-26
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 1 ggtccctacccgcaaggagctcacagtctattgagttccttttctgattctcccactaga 60
||||||| ||| ||||||||||||||||||||||||| | ||||||| | |||||||||
Sbjct: 1 ggtccctgccctcaaggagctcacagtctattgagttgcctttctgacttccccactaga 60
Query: 61 ttgtgagctcctggagggcaggcact 86
||||||||||||||||||||||||||
Sbjct: 61 ttgtgagctcctggagggcaggcact 86
>RF00917;mir-708;ABRQ01069155.1/911-831 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 105 bits (53), Expect = 9e-23
Identities = 74/81 (91%)
Strand = Plus / Minus
Query: 3 tccctacccgcaaggagctcacagtctattgagttccttttctgattctcccactagatt 62
||||| ||| ||||||||||||||||||||||||| | ||||||| | |||||||||||
Sbjct: 81 tccctgccctcaaggagctcacagtctattgagttgcctttctgacttccccactagatt 22
Query: 63 gtgagctcctggagggcaggc 83
|||||||||||||||||||||
Sbjct: 21 gtgagctcctggagggcaggc 1
>RF00917;mir-708;ABRR01063579.1/2239-2159 30538:Lama pacos
(alpaca)
Length = 81
Score = 93.7 bits (47), Expect = 3e-19
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 13 caaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcct 72
||||||||||||||||||||||||| | |||||| | |||||||||||| |||||||||
Sbjct: 71 caaggagctcacagtctattgagttgcctttctgcctttcccactagattttgagctcct 12
Query: 73 ggagggcaggc 83
|||||||||||
Sbjct: 11 ggagggcaggc 1
>RF00917;mir-708;AAKN02012362.1/20992-20912 10141:Cavia porcellus
(domestic guinea pig)
Length = 81
Score = 93.7 bits (47), Expect = 3e-19
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 13 caaggagctcacagtctattgagttccttttctgattctcccactagattgtgagctcct 72
||||||||||||||||||||||||| ||||| || | ||||||||||||| ||||||||
Sbjct: 71 caaggagctcacagtctattgagttacttttaagactttcccactagattgggagctcct 12
Query: 73 ggagggcaggc 83
|||||||||||
Sbjct: 11 ggagggcaggc 1
