miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31802_mmu-mir-29a:mirbase
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 accccttagaggatgactgatttcttttggtgttcagagtcaatagaattttctagcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accccttagaggatgactgatttcttttggtgttcagagtcaatagaattttctagcacc 60
Query: 61 atctgaaatcggttataatgattgggga 88
||||||||||||||||||||||||||||
Sbjct: 61 atctgaaatcggttataatgattgggga 88
>33044_rno-mir-3556a:mirbase
Length = 118
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 1 accccttagaggatgactgatttcttttggtgttcagagtcaatagaattttctagcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 accccttagaggatgactgatttcttttggtgttcagagtcaatagaattttctagcacc 41
Query: 61 atctgaaatcggttataatgattgggga 88
||||||||||||||||||||||||||||
Sbjct: 40 atctgaaatcggttataatgattgggga 13
>33935_ssc-mir-29a:mirbase
Length = 86
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 2 ccccttagaggatgactgatttcttttggtgttcagagtcaatagaattttctagcacca 61
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ccccttagaggatgactgatttcttttggtgttcagagtcaatataattttctagcacca 60
Query: 62 tctgaaatcggttataatgattgggg 87
||||||||||||||||||||||||||
Sbjct: 61 tctgaaatcggttataatgattgggg 86
>31446_oan-mir-29a-1:mirbase
Length = 118
Score = 139 bits (70), Expect = 4e-34
Identities = 79/82 (96%)
Strand = Plus / Plus
Query: 7 tagaggatgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctga 66
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 23 tagaggatgactgatttcttttggtgttcagagtcaatatcattttctagcaccatttga 82
Query: 67 aatcggttataatgattgggga 88
||||||||||||||||||||||
Sbjct: 83 aatcggttataatgattgggga 104
>25911_gga-mir-29a:mirbase
Length = 89
Score = 133 bits (67), Expect = 2e-32
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 6 ttagaggatgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctg 65
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 7 ttagaggatgactgatttcttttggtgttcagagtcaataatattttctagcaccatttg 66
Query: 66 aaatcggttataatgattgggga 88
|||||||||||| ||||||||||
Sbjct: 67 aaatcggttatagtgattgggga 89
>26970_eca-mir-29a:mirbase
Length = 65
Score = 121 bits (61), Expect = 9e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 12 gatgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaatcg 71
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 gatgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcg 60
Query: 72 gttat 76
|||||
Sbjct: 61 gttat 65
>27493_age-mir-29a:mirbase
Length = 64
Score = 119 bits (60), Expect = 3e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 13 atgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaatcgg 72
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 73 ttat 76
||||
Sbjct: 61 ttat 64
>27553_lla-mir-29a:mirbase
Length = 64
Score = 119 bits (60), Expect = 3e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 13 atgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaatcgg 72
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 73 ttat 76
||||
Sbjct: 61 ttat 64
>27601_sla-mir-29a:mirbase
Length = 64
Score = 119 bits (60), Expect = 3e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 13 atgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaatcgg 72
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 73 ttat 76
||||
Sbjct: 61 ttat 64
>27676_mml-mir-29a:mirbase
Length = 64
Score = 119 bits (60), Expect = 3e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 13 atgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaatcgg 72
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 73 ttat 76
||||
Sbjct: 61 ttat 64
>28189_mne-mir-29a:mirbase
Length = 64
Score = 119 bits (60), Expect = 3e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 13 atgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaatcgg 72
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 73 ttat 76
||||
Sbjct: 61 ttat 64
>28275_ggo-mir-29a:mirbase
Length = 64
Score = 119 bits (60), Expect = 3e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 13 atgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaatcgg 72
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 73 ttat 76
||||
Sbjct: 61 ttat 64
>28387_hsa-mir-29a:mirbase
Length = 64
Score = 119 bits (60), Expect = 3e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 13 atgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaatcgg 72
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 73 ttat 76
||||
Sbjct: 61 ttat 64
>30062_ppa-mir-29a:mirbase
Length = 64
Score = 119 bits (60), Expect = 3e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 13 atgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaatcgg 72
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 73 ttat 76
||||
Sbjct: 61 ttat 64
>30172_ptr-mir-29a:mirbase
Length = 64
Score = 119 bits (60), Expect = 3e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 13 atgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaatcgg 72
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 73 ttat 76
||||
Sbjct: 61 ttat 64
>30777_ppy-mir-29a:mirbase
Length = 64
Score = 119 bits (60), Expect = 3e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 13 atgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaatcgg 72
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 73 ttat 76
||||
Sbjct: 61 ttat 64
>33158_bta-mir-29a:mirbase
Length = 64
Score = 119 bits (60), Expect = 3e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 13 atgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaatcgg 72
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcgg 60
Query: 73 ttat 76
||||
Sbjct: 61 ttat 64
>26648_cfa-mir-29a:mirbase
Length = 60
Score = 111 bits (56), Expect = 8e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 16 actgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaatcggtta 75
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 actgatttcttttggtgttcagagtcaatataattttctagcaccatctgaaatcggtta 60
>27354_mdo-mir-29a:mirbase
Length = 64
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 13 atgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaatcgg 72
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 1 atgactgatttcttttggtgttcagagtcaatatcattttctagcaccatttgaaatcgg 60
Query: 73 ttat 76
||||
Sbjct: 61 ttat 64
>26417_tgu-mir-29a-1:mirbase
Length = 71
Score = 101 bits (51), Expect = 8e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 14 tgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaatcggt 73
|||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct: 1 tgactgatttcttttggtgttcagagtcaataataatttctagcaccatttgaaatcggt 60
Query: 74 tataatgattg 84
|||| ||||||
Sbjct: 61 tatagtgattg 71
>25727_xtr-mir-29a:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/73 (90%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 10 aggatgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaat 69
||||||||||||||||| |||||||||||||| | | |||||||||||||| ||||||
Sbjct: 11 aggatgactgatttcttctggtgttcagagtcttttg--ttttctagcaccatttgaaat 68
Query: 70 cggttataatgat 82
|||||||||||||
Sbjct: 69 cggttataatgat 81
>34243_dre-mir-29a-2:mirbase
Length = 71
Score = 61.9 bits (31), Expect = 7e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 14 tgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaatcggt 73
|||| ||||||||||||||||||||||| | | ||||||||||||| ||||||||||
Sbjct: 5 tgaccgatttcttttggtgttcagagtcttttggggtttctagcaccatttgaaatcggt 64
Query: 74 tataatg 80
|| ||||
Sbjct: 65 tacaatg 71
>34569_fru-mir-29a-1:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 3e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 14 tgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaatcggt 73
|||||||||||||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct: 5 tgactgatttcttttggtgttcagagtccaattctgtttctagcaccatttgaaatcggt 64
Query: 74 ta 75
||
Sbjct: 65 ta 66
>34242_dre-mir-29a-1:mirbase
Length = 126
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 52 tctagcaccatctgaaatcggttataatgattgggga 88
||||||||||| |||||||||||||||||| ||||||
Sbjct: 79 tctagcaccatttgaaatcggttataatgactgggga 115
>34716_tni-mir-29a-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 7e-08
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 14 tgactgatttcttttggtgttcagagtcaatagaattttctagcaccatctgaaatcggt 73
|||| ||||||||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct: 5 tgaccgatttcttttggtgttcagagtccaattctgtttctagcaccatttgaaatcggt 64
Query: 74 ta 75
||
Sbjct: 65 ta 66
>25729_xtr-mir-29c:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 52 tctagcaccatctgaaatcggttataatg 80
||||||||||| |||||||||||||||||
Sbjct: 54 tctagcaccatttgaaatcggttataatg 82
>34570_fru-mir-29a-2:mirbase
Length = 126
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 51 ttctagcaccatctgaaatcggttataa 78
|||||||||||| |||||||||||||||
Sbjct: 81 ttctagcaccatttgaaatcggttataa 108
>34717_tni-mir-29a-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 51 ttctagcaccatctgaaatcggttataa 78
|||||||||||| |||||||||||||||
Sbjct: 57 ttctagcaccatttgaaatcggttataa 84
>25451_pma-mir-29a:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 12 gatgactgatttcttttggtgttcagagt 40
|||||||||||||| |||||||| |||||
Sbjct: 6 gatgactgatttctcttggtgtttagagt 34
>25914_gga-mir-29c:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 tctagcaccatctgaaatcggttat 76
||||||||||| |||||||||||||
Sbjct: 53 tctagcaccatttgaaatcggttat 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 14 tgactgatttcttttggtgttcagagtc 41
|||| ||||||| |||||||||||||||
Sbjct: 15 tgaccgatttctcttggtgttcagagtc 42
>26418_tgu-mir-29a-2:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 tctagcaccatctgaaatcggttat 76
||||||||||| |||||||||||||
Sbjct: 39 tctagcaccatttgaaatcggttat 63
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 14 tgactgatttcttttggtgttcagagtc 41
|||| ||||||| |||||||||||||||
Sbjct: 1 tgaccgatttctcttggtgttcagagtc 28
>26973_eca-mir-29c:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 tctagcaccatctgaaatcggttat 76
||||||||||| |||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>26974_eca-mir-29c-2:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 tctagcaccatctgaaatcggttat 76
||||||||||| |||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>27679_mml-mir-29c:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 tctagcaccatctgaaatcggttat 76
||||||||||| |||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>28390_hsa-mir-29c:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 tctagcaccatctgaaatcggttat 76
||||||||||| |||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>30175_ptr-mir-29c:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 tctagcaccatctgaaatcggttat 76
||||||||||| |||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>30780_ppy-mir-29c:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 tctagcaccatctgaaatcggttat 76
||||||||||| |||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>31447_oan-mir-29a-2:mirbase
Length = 113
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 tctagcaccatctgaaatcggttat 76
||||||||||| |||||||||||||
Sbjct: 62 tctagcaccatttgaaatcggttat 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 14 tgactgatttcttttggtgttcagagtc 41
|||| ||||||| |||||||||||||||
Sbjct: 24 tgaccgatttctcttggtgttcagagtc 51
>31805_mmu-mir-29c:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 tctagcaccatctgaaatcggttat 76
||||||||||| |||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>32686_rno-mir-29c:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 tctagcaccatctgaaatcggttat 76
||||||||||| |||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>33045_rno-mir-3556b:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 52 tctagcaccatctgaaatcggttat 76
||||||||||| |||||||||||||
Sbjct: 48 tctagcaccatttgaaatcggttat 24
>33161_bta-mir-29c:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 tctagcaccatctgaaatcggttat 76
||||||||||| |||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>33937_ssc-mir-29c:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 tctagcaccatctgaaatcggttat 76
||||||||||| |||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>26652_cfa-mir-29c-2:mirbase
Length = 58
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 52 tctagcaccatctgaaatcggtta 75
||||||||||| ||||||||||||
Sbjct: 35 tctagcaccatttgaaatcggtta 58
>26651_cfa-mir-29c-1:mirbase
Length = 58
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 52 tctagcaccatctgaaatcggtta 75
||||||||||| ||||||||||||
Sbjct: 35 tctagcaccatttgaaatcggtta 58
