miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00074;mir-29;AADN02044957.1/857-794 9031:Gallus gallus
(chicken)
Length = 64
Score = 89.7 bits (45), Expect = 5e-18
Identities = 60/64 (93%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 15 ctgaccgatttctcctggtgttcagagtct--gtttttgtctagcaccatttgaaatcgg 72
|||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 1 ctgaccgatttctcttggtgttcagagtctcagtttctgtctagcaccatttgaaatcgg 60
Query: 73 ttat 76
||||
Sbjct: 61 ttat 64
>RF00074;mir-29;ABVD01453472.1/1046-987 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 60
Score = 67.9 bits (34), Expect = 2e-11
Identities = 55/58 (94%), Gaps = 3/58 (5%)
Strand = Plus / Plus
Query: 15 ctgaccgatttctcctggtgttcagagtctgtttttgtctagcaccatttgaaatcgg 72
|||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct: 1 ctgaccgatttctcctggtg-tcagagtctg-ttttgtctagcacca-ttgaaatcgg 55
>RF00074;mir-29;BAAF04011253.1/3876-3938 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 65.9 bits (33), Expect = 8e-11
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 16 tgaccgatttctcctggtgttcagagtctgtttt-tgtctagcaccatttgaaatcggtt 74
|||||||||||| |||||||||||||| ||| | | |||||||||||||||||||||||
Sbjct: 2 tgaccgatttcttttggtgttcagagtccgttctgtttctagcaccatttgaaatcggtt 61
Query: 75 a 75
|
Sbjct: 62 a 62
>RF00074;mir-29;AAWZ01025678.1/1955-1892 28377:Anolis carolinensis
(green anole)
Length = 64
Score = 54.0 bits (27), Expect = 3e-07
Identities = 56/63 (88%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 16 tgaccgatttctcctggtgttcagagtct-gtttt-tgtctagcaccatttgaaatcggt 73
|||| ||||||| ||||||||| |||||| ||| | | ||||||||||||||||||||||
Sbjct: 2 tgactgatttcttctggtgttcggagtctagttctctttctagcaccatttgaaatcggt 61
Query: 74 tat 76
|||
Sbjct: 62 tat 64
>RF00074;mir-29;BAAF04011924.1/411-473 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 tgtctagcaccatttgaaatcggtta 75
||||||||||||||||||||||||||
Sbjct: 37 tgtctagcaccatttgaaatcggtta 62
>RF00074;mir-29;AADN02039691.1/12626-12563 9031:Gallus gallus
(chicken)
Length = 64
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 tctagcaccatttgaaatcggttat 76
|||||||||||||||||||||||||
Sbjct: 40 tctagcaccatttgaaatcggttat 64
>RF00074;mir-29;BX323868.6/63999-64062 7955:Danio rerio
(zebrafish)
Length = 64
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 tctagcaccatttgaaatcggttat 76
|||||||||||||||||||||||||
Sbjct: 40 tctagcaccatttgaaatcggttat 64
>RF00074;mir-29;CAAB01003353.1/24980-24916 31033:Takifugu rubripes
Length = 65
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 tctagcaccatttgaaatcggttat 76
|||||||||||||||||||||||||
Sbjct: 41 tctagcaccatttgaaatcggttat 65
>RF00074;mir-29;BAAE01022609.1/1233-1169 8090:Oryzias latipes
(Japanese medaka)
Length = 65
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 tctagcaccatttgaaatcggttat 76
|||||||||||||||||||||||||
Sbjct: 41 tctagcaccatttgaaatcggttat 65
>RF00074;mir-29;AAVX01087182.1/157-94 7868:Callorhinchus milii
(ghost shark)
Length = 64
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 tctagcaccatttgaaatcggttat 76
|||||||||||||||||||||||||
Sbjct: 40 tctagcaccatttgaaatcggttat 64
>RF00074;mir-29;CAAE01015043.1/838981-839043 99883:Tetraodon
nigroviridis
Length = 63
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 tctagcaccatttgaaatcggtta 75
||||||||||||||||||||||||
Sbjct: 39 tctagcaccatttgaaatcggtta 62
>RF00074;mir-29;CAAB01004459.1/12691-12629 31033:Takifugu rubripes
Length = 63
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 tctagcaccatttgaaatcggtta 75
||||||||||||||||||||||||
Sbjct: 39 tctagcaccatttgaaatcggtta 62
>RF00074;mir-29;AANH01007454.1/2347-2415 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 69
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tgtctagcaccatttgaaatcggt 73
||||||||||||||||||||||||
Sbjct: 41 tgtctagcaccatttgaaatcggt 64
>RF00074;mir-29;AAVX01097121.1/1868-1805 7868:Callorhinchus milii
(ghost shark)
Length = 64
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 tctagcaccatttgaaatcggtta 75
||||||||||||||||||||||||
Sbjct: 40 tctagcaccatttgaaatcggtta 63
>RF00074;mir-29;CR749762.6/80332-80264 7955:Danio rerio
(zebrafish)
Length = 69
Score = 46.1 bits (23), Expect = 7e-05
Identities = 52/61 (85%), Gaps = 3/61 (4%)
Strand = Plus / Plus
Query: 16 tgaccgatttctcctggtgttcagagt---ctgtttttgtctagcaccatttgaaatcgg 72
|||| |||||| |||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct: 4 tgactgatttcctctggtgttcagagtggactgggtttttctagcaccatttgaaatcgg 63
Query: 73 t 73
|
Sbjct: 64 t 64
>RF00074;mir-29;AAVX01247987.1/1-62 7868:Callorhinchus milii
(ghost shark)
Length = 62
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 tctagcaccatttgaaatcggtt 74
|||||||||||||||||||||||
Sbjct: 40 tctagcaccatttgaaatcggtt 62
>RF00074;mir-29;AADN02039691.1/13652-13582 9031:Gallus gallus
(chicken)
Length = 71
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 42 ttgtctagcaccatttgaaatc 63
>RF00074;mir-29;CAAB01004459.1/12967-12899 31033:Takifugu rubripes
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tctagcaccatttgaaatcggt 73
||||||||||||||||||||||
Sbjct: 43 tctagcaccatttgaaatcggt 64
>RF00074;mir-29;BAAE01022609.1/1375-1305 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ttgtctagcaccatttgaaatc 70
||||||||||||||||||||||
Sbjct: 42 ttgtctagcaccatttgaaatc 63
>RF00074;mir-29;BAAF04011924.1/258-326 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tctagcaccatttgaaatcggt 73
||||||||||||||||||||||
Sbjct: 43 tctagcaccatttgaaatcggt 64
