miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00131;mir-30;AAHX01051344.1/20846-20903 10116:Rattus norvegicus
(Norway rat)
Length = 58
Score = 115 bits (58), Expect = 9e-26
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactcagctgtcatacatgagttggctgggatgtggatgtttacg 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactcagctgtcatacatgagttggctgggatgtggatgtttacg 58
>RF00131;mir-30;AAFC03029853.1/55200-55143 9913:Bos taurus
(cattle)
Length = 58
Score = 73.8 bits (37), Expect = 3e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactcagctgtcatacatgagttggctgggatgtggatgtttac 72
|||||||||||||||||||||||| | ||| |||| |||||||| ||||||||||||
Sbjct: 1 tgtaaacatcctacactcagctgtaacacacgagtcggctgggaggtggatgtttac 57
>RF00131;mir-30;AAKN02041734.1/76573-76630 10141:Cavia porcellus
(domestic guinea pig)
Length = 58
Score = 73.8 bits (37), Expect = 3e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactcagctgtcatacatgagttggctgggatgtggatgtttac 72
|||||||||||||||||||||||| ||| |||| |||||||||| |||| |||||||
Sbjct: 1 tgtaaacatcctacactcagctgtaatatatgaattggctgggaggtgggtgtttac 57
>RF00131;mir-30;AAYZ01122952.1/2610-2553 9978:Ochotona princeps
(American pika)
Length = 58
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactcagctgtcatacatgagttggctgggatgtggatgtttacg 73
|||||||||||||||||||||||| || | ||| ||||||||| |||||||||||||
Sbjct: 1 tgtaaacatcctacactcagctgtaatgcttgaactggctgggaggtggatgtttacg 58
>RF00131;mir-30;AANN01840061.1/697-754 9365:Erinaceus europaeus
(western European hedgehog)
Length = 58
Score = 54.0 bits (27), Expect = 3e-07
Identities = 53/59 (89%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactcagctgtcatacatgag-ttggctgggatgtggatgtttacg 73
|||||||||||||||||||||||| | ||| ||| ||||||||| |||||||||||||
Sbjct: 1 tgtaaacatcctacactcagctgttacaca-gagactggctgggaggtggatgtttacg 58
>RF00131;mir-30;AAWZ01001946.1/124724-124667 28377:Anolis
carolinensis (green anole)
Length = 58
Score = 50.1 bits (25), Expect = 5e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactcagctgtcatacatgagttggctgggatgtggatgtttac 72
|||||||||||||||||||||||| |||||| ||||||||| || ||||||||
Sbjct: 1 tgtaaacatcctacactcagctgtatcacatgaaatggctgggagatgaatgtttac 57
>RF00131;mir-30;AAPN01319291.1/21843-21900 9258:Ornithorhynchus
anatinus (platypus)
Length = 58
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactcagctgt 39
||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactcagctgt 24
>RF00131;mir-30;ABRQ01189397.1/2111-2054 9813:Procavia capensis
(cape rock hyrax)
Length = 58
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactcagctgt 39
||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactcagctgt 24
>RF00131;mir-30;BX571853.4/12957-12899 7955:Danio rerio
(zebrafish)
Length = 59
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactcagctgt 39
||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactcagctgt 24
>RF00131;mir-30;AADN02022376.1/2269-2326 9031:Gallus gallus
(chicken)
Length = 58
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 tgtaaacatcctacactcagct 37
||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactcagct 22
