miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00131;mir-30;ABRQ01022295.1/2169-2111 9813:Procavia capensis
(cape rock hyrax)
Length = 59
Score = 101 bits (51), Expect = 1e-21
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 17 tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttact 75
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtgagctaaaagtggctgggagagggttgtttact 59
>RF00131;mir-30;AAPN01350711.1/14399-14341 9258:Ornithorhynchus
anatinus (platypus)
Length = 59
Score = 85.7 bits (43), Expect = 9e-17
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 17 tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttact 75
|||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtcaagtcaaggaggctgggagagggttgtttact 59
>RF00131;mir-30;AAWZ01013131.1/19786-19728 28377:Anolis
carolinensis (green anole)
Length = 59
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 17 tgtaaacatcctacactctcagctgtgagctcaaggtggctgggagagggttgtttac 74
|||||||||||||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtgaatttgtggtggctgggagaaggttgtttac 58
>RF00131;mir-30;AADN02002528.1/113060-113119 9031:Gallus gallus
(chicken)
Length = 60
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 17 tgtaaacatcctacactctcagctgtg 43
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>RF00131;mir-30;BAAF04002319.1/6529-6586 8090:Oryzias latipes
(Japanese medaka)
Length = 58
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 17 tgtaaacatcctacactctcagctgtg 43
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>RF00131;mir-30;AAVX01018251.1/1878-1935 7868:Callorhinchus milii
(ghost shark)
Length = 58
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 17 tgtaaacatcctacactctcagctgtg 43
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>RF00131;mir-30;CR356236.12/32596-32538 7955:Danio rerio
(zebrafish)
Length = 59
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 tgtaaacatcctacactctcagctg 41
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctg 25
