miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00131;mir-30;AADN02002528.1/113060-113119 9031:Gallus gallus
(chicken)
Length = 60
Score = 103 bits (52), Expect = 3e-22
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaaggctgtttact 73
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
>RF00131;mir-30;AAWZ01013131.1/19786-19728 28377:Anolis
carolinensis (green anole)
Length = 59
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtgaa 42
|||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtgaa 29
>RF00131;mir-30;ABRQ01022295.1/2169-2111 9813:Procavia capensis
(cape rock hyrax)
Length = 59
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtga 41
||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtga 28
>RF00131;mir-30;BAAF04002319.1/6529-6586 8090:Oryzias latipes
(Japanese medaka)
Length = 58
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtg 40
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>RF00131;mir-30;AAVX01018251.1/1878-1935 7868:Callorhinchus milii
(ghost shark)
Length = 58
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgtg 40
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>RF00131;mir-30;AAPN01350711.1/14399-14341 9258:Ornithorhynchus
anatinus (platypus)
Length = 59
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctgt 39
||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgt 26
>RF00131;mir-30;CR356236.12/32596-32538 7955:Danio rerio
(zebrafish)
Length = 59
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 tgtaaacatcctacactctcagctg 38
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctg 25
