miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00131;mir-30;ABRQ01189397.1/6501-6442 9813:Procavia capensis
(cape rock hyrax)
Length = 60
Score = 79.8 bits (40), Expect = 5e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 12 tgtaaacatccccgactggaagctgtaagccacagccaagctttcagtcagatgtttgct 71
||||||||||||||||||||||||||| | || ||| |||||||||||| ||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgtacgacagagctaagctttcagtccgatgtttgct 60
>RF00131;mir-30;AAYZ01122954.1/1089-1030 9978:Ochotona princeps
(American pika)
Length = 60
Score = 77.8 bits (39), Expect = 2e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 12 tgtaaacatccccgactggaagctgtaagccacagccaagctttcagtcagatgtttgc 70
||||||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgtaagaagcggctaagctttcagtcagatgtttgc 59
>RF00131;mir-30;AAPN01319291.1/18051-18110 9258:Ornithorhynchus
anatinus (platypus)
Length = 60
Score = 71.9 bits (36), Expect = 1e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 12 tgtaaacatccccgactggaagctgtaagccacagccaagctttcagtcagatgtttgct 71
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgtaaaataccttcaagctttcagtcagatgtttgct 60
>RF00131;mir-30;AAVX01365666.1/262-201 7868:Callorhinchus milii
(ghost shark)
Length = 62
Score = 58.0 bits (29), Expect = 2e-08
Identities = 55/61 (90%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 12 tgtaaacatccccgactggaagctgtaagcca-cagc-caagctttcagtcagatgtttg 69
|||||||||||||||||||||||||||| || |||| | ||||||||||| ||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgtaaaacagcagctccagctttcagtccgatgtttg 60
Query: 70 c 70
|
Sbjct: 61 c 61
>RF00131;mir-30;ABRQ01009475.1/3495-3435 9813:Procavia capensis
(cape rock hyrax)
Length = 61
Score = 56.0 bits (28), Expect = 7e-08
Identities = 53/60 (88%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 12 tgtaaacatccccgactggaagctgt-aagccacagccaagctttcagtcagatgtttgc 70
||||||||||| |||||||||||||| ||||||||| |||||||||| |||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgtgaagccacagatgggctttcagtcggatgtttgc 60
>RF00131;mir-30;ABQF01032194.1/21176-21232 59729:Taeniopygia
guttata
Length = 57
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 12 tgtaaacatccccgactggaagctgta 38
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgta 27
>RF00131;mir-30;AADN02022374.1/21255-21311 9031:Gallus gallus
(chicken)
Length = 57
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 12 tgtaaacatccccgactggaagctgta 38
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgta 27
>RF00131;mir-30;BX323874.4/7995-7933 7955:Danio rerio (zebrafish)
Length = 63
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 tgtaaacatccccgactggaagctgt 37
||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgt 26
>RF00131;mir-30;CAAB01000020.1/215834-215777 31033:Takifugu
rubripes
Length = 58
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 tgtaaacatccccgactggaagctgt 37
||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgt 26
>RF00131;mir-30;AANH01002465.1/73021-72964 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 58
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 tgtaaacatccccgactggaagctgt 37
||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgt 26
>RF00131;mir-30;BAAF04077266.1/8695-8638 8090:Oryzias latipes
(Japanese medaka)
Length = 58
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 tgtaaacatccccgactggaagctgt 37
||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgt 26
>RF00131;mir-30;ABRT010169987.1/2049-1991 9478:Tarsius syrichta
(Philippine tarsier)
Length = 59
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccccgactggaagctgt 37
||||||||||| ||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgt 26
>RF00131;mir-30;AADN02002528.1/88445-88506 9031:Gallus gallus
(chicken)
Length = 62
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccccgactggaagctgt 37
||||||||||| ||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgt 26
>RF00131;mir-30;AAVX01474940.1/155-214 7868:Callorhinchus milii
(ghost shark)
Length = 60
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccccgactggaagctgt 37
||||||||||| ||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgt 26
