miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00661;mir-31;ABRQ01173586.1/2990-2912 9813:Procavia capensis
(cape rock hyrax)
Length = 79
Score = 143 bits (72), Expect = 5e-34
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 15 ggaactggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaa 74
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 ggaactggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaa 60
Query: 75 catattgccatctttc 90
||||||||||||||||
Sbjct: 61 catattgccatctttc 76
>RF00661;mir-31;AAWZ01002824.1/52915-52993 28377:Anolis
carolinensis (green anole)
Length = 79
Score = 93.7 bits (47), Expect = 4e-19
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 19 ctggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacata 78
|||||| |||||||||||| ||||||||||| ||| | |||||||||||||||||||||
Sbjct: 5 ctggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaacata 64
Query: 79 ttgccatctttcctg 93
||||| |||||||||
Sbjct: 65 ttgccctctttcctg 79
>RF00661;mir-31;AC189661.2/146363-146285 9031:Gallus gallus
(chicken)
Length = 79
Score = 93.7 bits (47), Expect = 4e-19
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 19 ctggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacata 78
|||||| |||||||||||| ||||||||||||| | || | |||||||||||||||||||
Sbjct: 5 ctggaggggaggcaagatgttggcatagctgttaacctaaaaacctgctatgccaacata 64
Query: 79 ttgccatctttcctg 93
||| |||||||||||
Sbjct: 65 ttgtcatctttcctg 79
>RF00661;mir-31;AAPN01033181.1/1752-1830 9258:Ornithorhynchus
anatinus (platypus)
Length = 79
Score = 79.8 bits (40), Expect = 6e-15
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 19 ctggagaggaggcaagatgctggcatagctgttgaactgagaacctgctatgccaacata 78
|||||||| |||||||||| ||||||||||||||| | ||||||||||||||| ||||
Sbjct: 5 ctggagagaaggcaagatgttggcatagctgttgagttaagaacctgctatgccgacatg 64
Query: 79 ttgccatctttc 90
||| ||||||||
Sbjct: 65 ttgtcatctttc 76
>RF00661;mir-31;CAAE01014681.1/977367-977288 99883:Tetraodon
nigroviridis
Length = 80
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 21 ggagaggaggcaagatgctggcatagctg 49
|||||||||||||||||||||||||||||
Sbjct: 7 ggagaggaggcaagatgctggcatagctg 35
>RF00661;mir-31;AANH01007167.1/95060-94981 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 55/64 (85%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 28 aggcaagatgctggcatagctgttgaactgaga-acctgctatgccaacatattgccatc 86
|||||||||| ||||||||||||| || ||| | |||||||| ||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctgttaaattgaaatccctgctatatcaacatattgccatt 73
Query: 87 tttc 90
||||
Sbjct: 74 tttc 77
>RF00661;mir-31;BAAE01170693.1/1745-1803 8090:Oryzias latipes
(Japanese medaka)
Length = 59
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 29 ggcaagatgctggcatagctgttgaa 54
||||||||| ||||||||||||||||
Sbjct: 1 ggcaagatgttggcatagctgttgaa 26
