miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00667;mir-33;AC105358.8/20002-19934 10090:Mus musculus (house
mouse)
Length = 69
Score = 125 bits (63), Expect = 7e-29
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 3 gtggtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgc 62
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3 gtggtgcattgtagttgcattgcatgttctggcaatacctgtgcaatgtttccacagtgc 62
Query: 63 atcacgg 69
|||||||
Sbjct: 63 atcacgg 69
>RF00667;mir-33;AAYZ01156209.1/2544-2612 9978:Ochotona princeps
(American pika)
Length = 69
Score = 97.6 bits (49), Expect = 2e-20
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgcat 64
||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgttctggcggtaaccgtgcaatgtttccacagtgcat 64
Query: 65 c 65
|
Sbjct: 65 c 65
>RF00667;mir-33;AAIY01417522.1/685-752 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 68
Score = 89.7 bits (45), Expect = 4e-18
Identities = 58/61 (95%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgcat 64
|||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcacgttctggcagtgcc-gtgcaatgtttccacagtgcat 63
Query: 65 c 65
|
Sbjct: 64 c 64
>RF00667;mir-33;AAPY01023874.1/2160-2093 37347:Tupaia belangeri
(northern tree shrew)
Length = 68
Score = 83.8 bits (42), Expect = 2e-16
Identities = 58/62 (93%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgcatc 65
|||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgtcctgacagtacc-atgcaatgtttccacagtgcatc 64
Query: 66 ac 67
||
Sbjct: 65 ac 66
>RF00667;mir-33;AAWZ01021152.1/40382-40314 28377:Anolis
carolinensis (green anole)
Length = 69
Score = 83.8 bits (42), Expect = 2e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgca 63
||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctagcagtatttgtgcaatgtttccgcagtgca 63
>RF00667;mir-33;AAPN01437665.1/3526-3458 9258:Ornithorhynchus
anatinus (platypus)
Length = 69
Score = 77.8 bits (39), Expect = 2e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtttccacagtgcat 64
||||||||||||||||||||| |||| |||||||| |||||||||| |||||||||||
Sbjct: 6 gtgcattgtagttgcattgcacgttccggcagtactggtgcaatgttcccacagtgcat 64
>RF00667;mir-33;AADN02006059.1/2390-2322 9031:Gallus gallus
(chicken)
Length = 69
Score = 77.8 bits (39), Expect = 2e-14
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtt 52
|||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgtgctggcagtaactgtgcaatgtt 52
>RF00667;mir-33;ABRP01241176.1/6014-5945 132908:Pteropus vampyrus
(large flying fox)
Length = 70
Score = 71.9 bits (36), Expect = 9e-13
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1 ccgtggtgcattgtagttgcattgcatg-ttctggcagtacctgtgcaatgtttccacag 59
|||||||||||||||||||||||||||| || ||| ||||| |||| |||||||||||
Sbjct: 1 ccgtggtgcattgtagttgcattgcatgtttatggtggtacccatgcagtgtttccacag 60
Query: 60 tgcatcac 67
||||||||
Sbjct: 61 tgcatcac 68
>RF00667;mir-33;AANH01011106.1/1499-1563 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 65
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 3 gtggtgcattgtagttgcattgcatgtt 30
||||||||||||||||||||||||||||
Sbjct: 3 gtggtgcattgtagttgcattgcatgtt 30
>RF00667;mir-33;AANH01004390.1/133329-133397 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 69
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 3 gtggtgcattgtagttgcattgcatgt 29
|||||||||||||||||||||||||||
Sbjct: 3 gtggtgcattgtagttgcattgcatgt 29
>RF00667;mir-33;AANH01004216.1/19959-19891 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 69
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 gtggtgcattgtagttgcattgcatg 28
||||||||||||||||||||||||||
Sbjct: 3 gtggtgcattgtagttgcattgcatg 28
>RF00667;mir-33;BAAE01000948.1/5094-5161 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 gtggtgcattgtagttgcattgcatg 28
||||||||||||||||||||||||||
Sbjct: 3 gtggtgcattgtagttgcattgcatg 28
>RF00667;mir-33;AAJJ01000068.1/107964-107901 7070:Tribolium
castaneum (red flour beetle)
Length = 64
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgtt 30
||||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgtt 30
>RF00667;mir-33;AAWZ01041754.1/18913-18979 28377:Anolis
carolinensis (green anole)
Length = 67
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgt 29
|||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgt 29
>RF00667;mir-33;ABEP02003886.1/24922-24856 7739:Branchiostoma
floridae (Florida lancelet)
Length = 67
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgt 29
|||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgt 29
>RF00667;mir-33;ABEP02003886.1/24513-24447 7739:Branchiostoma
floridae (Florida lancelet)
Length = 67
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgt 29
|||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgt 29
>RF00667;mir-33;AAPN01422427.1/10575-10641 9258:Ornithorhynchus
anatinus (platypus)
Length = 67
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgt 29
||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgt 29
>RF00667;mir-33;CAAE01014738.1/1624047-1623979 99883:Tetraodon
nigroviridis
Length = 69
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 gtggtgcattgtagttgcattgca 26
||||||||||||||||||||||||
Sbjct: 3 gtggtgcattgtagttgcattgca 26
>RF00667;mir-33;CAAB01001000.1/62134-62064 31033:Takifugu rubripes
Length = 71
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 gtggtgcattgtagttgcattgca 26
||||||||||||||||||||||||
Sbjct: 3 gtggtgcattgtagttgcattgca 26
>RF00667;mir-33;BAAE01264275.1/1544-1477 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgt 29
||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgt 29
>RF00667;mir-33;AAZX01017121.1/8029-8095 7425:Nasonia vitripennis
(jewel wasp)
Length = 67
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatg 28
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;AADG05009493.1/1176-1111 7460:Apis mellifera
(honey bee)
Length = 66
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatg 28
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;AAGJ02141394.1/21086-21155 7668:Strongylocentrotus
purpuratus
Length = 70
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 tggtgcattgtagttgcattgcatgt 29
||||||||||| ||||||||||||||
Sbjct: 4 tggtgcattgtcgttgcattgcatgt 29
>RF00667;mir-33;AACT01006707.1/8663-8725 51511:Ciona savignyi
Length = 63
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgca 26
||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgca 26
>RF00667;mir-33;ABQO010273055.1/1298-1232 9315:Macropus eugenii
(tammar wallaby)
Length = 67
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgca 26
||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgca 26
>RF00667;mir-33;AAWU01038467.1/41288-41214 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgca 26
||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgca 26
>RF00667;mir-33;AAGE02018815.1/108790-108863 7159:Aedes aegypti
(yellow fever mosquito)
Length = 74
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgca 26
||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgca 26
>RF00667;mir-33;ABKP02018093.1/235-307 377271:Anopheles gambiae M
Length = 73
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgca 26
||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgca 26
>RF00667;mir-33;AABS01001128.1/11040-10976 7719:Ciona intestinalis
Length = 65
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgca 26
|||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgca 26
>RF00667;mir-33;AADK01019309.1/4596-4529 7091:Bombyx mori
(domestic silkworm)
Length = 68
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgca 26
|||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgca 26
