miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31815_mmu-mir-34a:mirbase
Length = 102
Score = 188 bits (95), Expect = 5e-49
Identities = 98/99 (98%)
Strand = Plus / Plus
Query: 4 gctgtgagtaattctttggcagtgtcttagctggttgttgtgagtattagctaaggaagc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gctgtgagtaattctttggcagtgtcttagctggttgttgtgagtattagctaaggaagc 63
Query: 64 aatcagcaagtatactgccctagaagtgctgcacgttgt 102
|||||||||||||||||||||||||||||||||| ||||
Sbjct: 64 aatcagcaagtatactgccctagaagtgctgcacattgt 102
>27360_mdo-mir-34a:mirbase
Length = 111
Score = 165 bits (83), Expect = 8e-42
Identities = 95/99 (95%)
Strand = Plus / Plus
Query: 4 gctgtgagtaattctttggcagtgtcttagctggttgttgtgagtattagctaaggaagc 63
||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 6 gctgtgagtgtttctttggcagtgtcttagctggttgttgtgagtaatagataaggaagc 65
Query: 64 aatcagcaagtatactgccctagaagtgctgcacgttgt 102
|||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aatcagcaagtatactgccctagaagtgctgcacgttgt 104
>27604_sla-mir-34a:mirbase
Length = 111
Score = 155 bits (78), Expect = 7e-39
Identities = 96/102 (94%)
Strand = Plus / Plus
Query: 1 ccggctgtgagtaattctttggcagtgtcttagctggttgttgtgagtattagctaagga 60
|||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||
Sbjct: 3 ccggctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagtgaagga 62
Query: 61 agcaatcagcaagtatactgccctagaagtgctgcacgttgt 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 agcaatcagcaagtatactgccctagaagtgctgcacgttgt 104
>27557_lla-mir-34a:mirbase
Length = 111
Score = 149 bits (75), Expect = 5e-37
Identities = 93/99 (93%)
Strand = Plus / Plus
Query: 4 gctgtgagtaattctttggcagtgtcttagctggttgttgtgagtattagctaaggaagc 63
||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct: 6 gctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagtgaaggaagc 65
Query: 64 aatcagcaagtatactgccctagaagtgctgcacgttgt 102
|||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aatcagcaagtatactgccctagaagtgctgcacgttgt 104
>28285_ggo-mir-34a:mirbase
Length = 110
Score = 149 bits (75), Expect = 5e-37
Identities = 94/99 (94%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 4 gctgtgagtaattctttggcagtgtcttagctggttgttgtgagtattagctaaggaagc 63
||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct: 6 gctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatag-taaggaagc 64
Query: 64 aatcagcaagtatactgccctagaagtgctgcacgttgt 102
|||||||||||||||||||||||||||||||||||||||
Sbjct: 65 aatcagcaagtatactgccctagaagtgctgcacgttgt 103
>28401_hsa-mir-34a:mirbase
Length = 110
Score = 149 bits (75), Expect = 5e-37
Identities = 94/99 (94%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 4 gctgtgagtaattctttggcagtgtcttagctggttgttgtgagtattagctaaggaagc 63
||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct: 6 gctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatag-taaggaagc 64
Query: 64 aatcagcaagtatactgccctagaagtgctgcacgttgt 102
|||||||||||||||||||||||||||||||||||||||
Sbjct: 65 aatcagcaagtatactgccctagaagtgctgcacgttgt 103
>30072_ppa-mir-34a:mirbase
Length = 110
Score = 149 bits (75), Expect = 5e-37
Identities = 94/99 (94%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 4 gctgtgagtaattctttggcagtgtcttagctggttgttgtgagtattagctaaggaagc 63
||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct: 6 gctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatag-taaggaagc 64
Query: 64 aatcagcaagtatactgccctagaagtgctgcacgttgt 102
|||||||||||||||||||||||||||||||||||||||
Sbjct: 65 aatcagcaagtatactgccctagaagtgctgcacgttgt 103
>30187_ptr-mir-34a:mirbase
Length = 110
Score = 149 bits (75), Expect = 5e-37
Identities = 94/99 (94%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 4 gctgtgagtaattctttggcagtgtcttagctggttgttgtgagtattagctaaggaagc 63
||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct: 6 gctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatag-taaggaagc 64
Query: 64 aatcagcaagtatactgccctagaagtgctgcacgttgt 102
|||||||||||||||||||||||||||||||||||||||
Sbjct: 65 aatcagcaagtatactgccctagaagtgctgcacgttgt 103
>30791_ppy-mir-34a:mirbase
Length = 110
Score = 149 bits (75), Expect = 5e-37
Identities = 94/99 (94%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 4 gctgtgagtaattctttggcagtgtcttagctggttgttgtgagtattagctaaggaagc 63
||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct: 6 gctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatag-taaggaagc 64
Query: 64 aatcagcaagtatactgccctagaagtgctgcacgttgt 102
|||||||||||||||||||||||||||||||||||||||
Sbjct: 65 aatcagcaagtatactgccctagaagtgctgcacgttgt 103
>25925_gga-mir-34a:mirbase
Length = 109
Score = 141 bits (71), Expect = 1e-34
Identities = 92/99 (92%)
Strand = Plus / Plus
Query: 4 gctgtgagtaattctttggcagtgtcttagctggttgttgtgagtattagctaaggaagc 63
||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct: 5 gctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagttaaggaagc 64
Query: 64 aatcagcaagtatactgccctagaagtgctgcacgttgt 102
|||||||||||||||||||||||||||||| ||| ||||
Sbjct: 65 aatcagcaagtatactgccctagaagtgctacacattgt 103
>27496_age-mir-34a:mirbase
Length = 111
Score = 141 bits (71), Expect = 1e-34
Identities = 92/99 (92%)
Strand = Plus / Plus
Query: 4 gctgtgagtaattctttggcagtgtcttagctggttgttgtgagtattagctaaggaagc 63
||||||||| ||||||||||||||||||||||||||||||| | | ||| ||||||||
Sbjct: 6 gctgtgagtgtttctttggcagtgtcttagctggttgttgtgtgcaatagtgaaggaagc 65
Query: 64 aatcagcaagtatactgccctagaagtgctgcacgttgt 102
|||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aatcagcaagtatactgccctagaagtgctgcacgttgt 104
>33175_bta-mir-34a:mirbase
Length = 107
Score = 141 bits (71), Expect = 1e-34
Identities = 92/99 (92%)
Strand = Plus / Plus
Query: 4 gctgtgagtaattctttggcagtgtcttagctggttgttgtgagtattagctaaggaagc 63
||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 6 gctgtgagtgtttctttggcagtgtcttagctggttgttgtgagtaataatgcaggaagc 65
Query: 64 aatcagcaagtatactgccctagaagtgctgcacgttgt 102
|||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aatcagcaagtatactgccctagaagtgctgcacgttgt 104
>27691_mml-mir-34a:mirbase
Length = 110
Score = 133 bits (67), Expect = 3e-32
Identities = 92/99 (92%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 4 gctgtgagtaattctttggcagtgtcttagctggttgttgtgagtattagctaaggaagc 63
||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct: 6 gctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatag-taaggaagc 64
Query: 64 aatcagcaagtatactgccctagaagtgctgcacgttgt 102
|||||||||||||||||||||||||||||| ||| ||||
Sbjct: 65 aatcagcaagtatactgccctagaagtgctacacattgt 103
>28197_mne-mir-34a:mirbase
Length = 110
Score = 133 bits (67), Expect = 3e-32
Identities = 92/99 (92%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 4 gctgtgagtaattctttggcagtgtcttagctggttgttgtgagtattagctaaggaagc 63
||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct: 6 gctgtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatag-taaggaagc 64
Query: 64 aatcagcaagtatactgccctagaagtgctgcacgttgt 102
|||||||||||||||||||||||||||||| ||| ||||
Sbjct: 65 aatcagcaagtatactgccctagaagtgctacacattgt 103
>26663_cfa-mir-34a:mirbase
Length = 66
Score = 107 bits (54), Expect = 2e-24
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 20 tggcagtgtcttagctggttgttgtgagtattagctaaggaagcaatcagcaagtatact 79
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 1 tggcagtgtcttagctggttgttgtgagtaatagtgaaggaagcaatcagcaagtatact 60
Query: 80 gcccta 85
||||||
Sbjct: 61 gcccta 66
>26432_tgu-mir-34a:mirbase
Length = 72
Score = 101 bits (51), Expect = 1e-22
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 15 ttctttggcagtgtcttagctggttgttgtgagtattagctaaggaagcaatcagcaagt 74
||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct: 6 ttctttggcagtgtcttagctggttgttgtgagcaatagtcaaggaagcaatcagcaagt 65
Query: 75 atactgc 81
|||||||
Sbjct: 66 atactgc 72
>33948_ssc-mir-34a:mirbase
Length = 76
Score = 99.6 bits (50), Expect = 4e-22
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 15 ttctttggcagtgtcttagctggttgttgtgagtattagctaaggaagcaatcagcaagt 74
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||
Sbjct: 2 ttctttggcagtgtcttagctggttgttgtgagtaatagcaaaggaagcaatcagc-agc 60
Query: 75 atactgccctagaa 88
|| |||||||||||
Sbjct: 61 atcctgccctagaa 74
>26984_eca-mir-34:mirbase
Length = 63
Score = 85.7 bits (43), Expect = 6e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 20 tggcagtgtcttagctggttgttgtgagtattagctaaggaagcaatcagcaagtatact 79
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 tggcagtgtcttagctggttgttgtgagtaatagtgcgggaagcaatcagcaagtatact 60
Query: 80 gcc 82
|||
Sbjct: 61 gcc 63
>34253_dre-mir-34:mirbase
Length = 98
Score = 69.9 bits (35), Expect = 3e-13
Identities = 69/79 (87%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 4 gctgtgagtaattctttggcagtgtcttagctggttgttgtgagtattagctaaggaagc 63
||||||||| |||| |||||||||||||||||||||||||| | | | | || |||||
Sbjct: 3 gctgtgagtggttctctggcagtgtcttagctggttgttgtgtggagt-gagaacgaagc 61
Query: 64 aatcagcaagtatactgcc 82
|||||||||||||||||||
Sbjct: 62 aatcagcaagtatactgcc 80
>25742_xtr-mir-34a:mirbase
Length = 96
Score = 65.9 bits (33), Expect = 5e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 5 ctgtgagtaattctttggcagtgtcttagctggttgttgtg 45
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 ctgtgagtgtttctttggcagtgtcttagctggttgttgtg 41
