miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;AADN02040793.1/20235-20325 9031:Gallus gallus
(chicken)
Length = 91
Score = 133 bits (67), Expect = 5e-31
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 15 ttctttggcagtgtcttagctggttgttgtgagtattagctaaggaagcaatcagcaagt 74
||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct: 9 ttctttggcagtgtcttagctggttgttgtgagcaatagttaaggaagcaatcagcaagt 68
Query: 75 atactgccctagaagtgct 93
|||||||||||||||||||
Sbjct: 69 atactgccctagaagtgct 87
>RF00456;mir-34;AANH01002669.1/122646-122735 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 71.9 bits (36), Expect = 2e-12
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 15 ttctttggcagtgtcttagctggttgttgtgagtattagctaaggaagcaatcagcaagt 74
|||| |||||||||||||||||||||||||||| | | | || ||||||||||||||||
Sbjct: 9 ttctctggcagtgtcttagctggttgttgtgaggagt-gagaacgaagcaatcagcaagt 67
Query: 75 atactgcc 82
||||||||
Sbjct: 68 atactgcc 75
>RF00456;mir-34;AAVX01252978.1/732-820 7868:Callorhinchus milii
(ghost shark)
Length = 89
Score = 56.0 bits (28), Expect = 9e-08
Identities = 70/83 (84%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 15 ttctttggcagtgtcttagctggttgttgtgagtattagctaaggaagcaatcagcaagt 74
|||| |||||||||||||||||||||||||| | | | | | |||||||||||||||
Sbjct: 9 ttctctggcagtgtcttagctggttgttgtgtgcagt--cagaaaaagcaatcagcaagt 66
Query: 75 atactgccctagaagtgctgcac 97
|||||||| |||| ||||||||
Sbjct: 67 atactgccgcagaaatgctgcac 89
