miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31818_mmu-mir-34c:mirbase
Length = 77
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
Query: 61 agccaggtaaaaagact 77
|||||||||||||||||
Sbjct: 61 agccaggtaaaaagact 77
>28403_hsa-mir-34c:mirbase
Length = 77
Score = 141 bits (71), Expect = 8e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
Query: 61 agccaggtaaaaaga 75
||||||||||||||
Sbjct: 61 ggccaggtaaaaaga 75
>28404_hsa-mir-34c:mirbase
Length = 77
Score = 141 bits (71), Expect = 8e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
Query: 61 agccaggtaaaaaga 75
||||||||||||||
Sbjct: 61 ggccaggtaaaaaga 75
>30793_ppy-mir-34c:mirbase
Length = 77
Score = 141 bits (71), Expect = 8e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
Query: 61 agccaggtaaaaaga 75
||||||||||||||
Sbjct: 61 ggccaggtaaaaaga 75
>30794_ppy-mir-34c:mirbase
Length = 77
Score = 141 bits (71), Expect = 8e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
Query: 61 agccaggtaaaaaga 75
||||||||||||||
Sbjct: 61 ggccaggtaaaaaga 75
>30189_ptr-mir-34c:mirbase
Length = 76
Score = 139 bits (70), Expect = 3e-34
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 2 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacaca 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacg 60
Query: 62 gccaggtaaaaaga 75
||||||||||||||
Sbjct: 61 gccaggtaaaaaga 74
>26987_eca-mir-34c:mirbase
Length = 77
Score = 133 bits (67), Expect = 2e-32
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 agtctagttactaggcagtgtagttagctgattgctaataataccaatcactaaccacac 60
Query: 61 agccaggtaaaaaga 75
||||||||||||||
Sbjct: 61 ggccaggtaaaaaga 75
>33177_bta-mir-34c:mirbase
Length = 77
Score = 133 bits (67), Expect = 2e-32
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 agtctagttactaggcagtgtagttagctgattgctaataataccaatcactaaccacac 60
Query: 61 agccaggtaaaaaga 75
||||||||||||||
Sbjct: 61 ggccaggtaaaaaga 75
>27693_mml-mir-34c:mirbase
Length = 77
Score = 125 bits (63), Expect = 5e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 agtctagttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacac 60
Query: 61 agccaggtaaaaaga 75
||||||||||||||
Sbjct: 61 ggccaggtaaaaaga 75
>27694_mml-mir-34c:mirbase
Length = 77
Score = 125 bits (63), Expect = 5e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 agtctagttaccaggcagtgtagttagctgattgctgatagtaccaatcactaaccacac 60
Query: 61 agccaggtaaaaaga 75
||||||||||||||
Sbjct: 61 ggccaggtaaaaaga 75
>31462_oan-mir-34:mirbase
Length = 90
Score = 119 bits (60), Expect = 3e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 9 agtctagttactaggcagtgtagttagctgattgctattaacaccaatcactagccacac 68
Query: 61 agccaggtaaaaagac 76
||||||||||||||||
Sbjct: 69 agccaggtaaaaagac 84
>33949_ssc-mir-34c:mirbase
Length = 80
Score = 117 bits (59), Expect = 1e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 1 agtctagttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacac 60
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 1 agtctagttactaggcagtgtagttagctgattgctgataaaaccaatcactaaccacac 60
Query: 61 agccaggtaaaaaga 75
||||||||||||||
Sbjct: 61 ggccaggtaaaaaga 75
>26665_cfa-mir-34c:mirbase
Length = 55
Score = 101 bits (51), Expect = 7e-23
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 13 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacagccagg 67
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 aggcagtgtagttagctgattgctaatagtaccaatcactaaccacacggccagg 55
>25927_gga-mir-34c:mirbase
Length = 74
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 7 gttactaggcagtgtagttagctgattgctaatagtaccaatcactaaccacacagccag 66
||||| ||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct: 7 gttaccaggcagtgtagttagctgattgccaccaggaccaatcactaaccacacagccag 66
Query: 67 gtaaaaag 74
||||||||
Sbjct: 67 gtaaaaag 74
>26433_tgu-mir-34b:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 aggcagtgtagttagctgattgc 35
|||||||||||||||||||||||
Sbjct: 41 aggcagtgtagttagctgattgc 63
>25743_xtr-mir-34b-1:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 aggcagtgtagttagctgattg 34
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>25744_xtr-mir-34b-2:mirbase
Length = 67
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 aggcagtgtagttagctgattg 34
||||||||||||||||||||||
Sbjct: 4 aggcagtgtagttagctgattg 25
>25745_xtr-mir-34b-3:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 aggcagtgtagttagctgattg 34
||||||||||||||||||||||
Sbjct: 13 aggcagtgtagttagctgattg 34
>25746_xtr-mir-34b-4:mirbase
Length = 67
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 aggcagtgtagttagctgattg 34
||||||||||||||||||||||
Sbjct: 4 aggcagtgtagttagctgattg 25
>25926_gga-mir-34b:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 aggcagtgtagttagctgattg 34
||||||||||||||||||||||
Sbjct: 14 aggcagtgtagttagctgattg 35
>26434_tgu-mir-34c-1:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 aggcagtgtagttagctgattg 34
||||||||||||||||||||||
Sbjct: 11 aggcagtgtagttagctgattg 32
>26435_tgu-mir-34c-2:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 aggcagtgtagttagctgattg 34
||||||||||||||||||||||
Sbjct: 11 aggcagtgtagttagctgattg 32
>26664_cfa-mir-34b:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 taggcagtgtagttagctgattg 34
||||||||||| |||||||||||
Sbjct: 13 taggcagtgtaattagctgattg 35
>26985_eca-mir-34b:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 taggcagtgtagttagctgattg 34
||||||||||| |||||||||||
Sbjct: 13 taggcagtgtaattagctgattg 35
>26986_eca-mir-34b:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 taggcagtgtagttagctgattg 34
||||||||||| |||||||||||
Sbjct: 13 taggcagtgtaattagctgattg 35
>31816_mmu-mir-34b:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 taggcagtgtagttagctgattg 34
||||||||||| |||||||||||
Sbjct: 13 taggcagtgtaattagctgattg 35
>31817_mmu-mir-34b:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 taggcagtgtagttagctgattg 34
||||||||||| |||||||||||
Sbjct: 13 taggcagtgtaattagctgattg 35
>32698_rno-mir-34b:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 taggcagtgtagttagctgattg 34
||||||||||| |||||||||||
Sbjct: 13 taggcagtgtaattagctgattg 35
>33176_bta-mir-34b:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 taggcagtgtagttagctgattg 34
||||||||||| |||||||||||
Sbjct: 13 taggcagtgtaattagctgattg 35
>34254_dre-mir-34b:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 taggcagtgtagttagctgattg 34
|||||||||| ||||||||||||
Sbjct: 13 taggcagtgttgttagctgattg 35
