miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00464;mir-92;CT033786.13/50148-50227 10090:Mus musculus (house
mouse)
Length = 80
Score = 129 bits (65), Expect = 5e-30
Identities = 77/80 (96%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 1 ctttctacacaggttgggatttgtcgcaatgctgtgtt--tctgtatagtattgcacttg 58
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 1 ctttctacacaggttgggatttgtcgcaatgctgtgtttctctgtatggtattgcacttg 60
Query: 59 tcccggcctgttgagtttgg 78
||||||||||||||||||||
Sbjct: 61 tcccggcctgttgagtttgg 80
>RF00464;mir-92;AAYZ01184872.1/1157-1234 9978:Ochotona princeps
(American pika)
Length = 78
Score = 91.7 bits (46), Expect = 1e-18
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 1 ctttctacacaggttgggatttgtcgcaatgctgtgtttctgtatagtattgcacttgtc 60
|||||| |||||| ||||| ||||||||||||||| ||||| | ||||||||||||||
Sbjct: 1 ctttctgcacaggctgggaccggtcgcaatgctgtgtgtctgtgtggtattgcacttgtc 60
Query: 61 ccggcctgttgagtttgg 78
||||||||||||||||||
Sbjct: 61 ccggcctgttgagtttgg 78
>RF00464;mir-92;AADN02029366.1/34887-34810 9031:Gallus gallus
(chicken)
Length = 78
Score = 75.8 bits (38), Expect = 7e-14
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 1 ctttctacacaggttgggatttgtcgcaatgctgtgtttctgtatagtattgcacttgtc 60
|||||||||||||||||||| || ||||||||||| | | | | ||||||||||||||
Sbjct: 1 ctttctacacaggttgggatcagttgcaatgctgtgcgtttctgtggtattgcacttgtc 60
Query: 61 ccggcctgttgagtttgg 78
||||||||||||| ||||
Sbjct: 61 ccggcctgttgaggttgg 78
>RF00464;mir-92;ABRR01417027.1/760-838 30538:Lama pacos (alpaca)
Length = 79
Score = 65.9 bits (33), Expect = 7e-11
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 7 acacaggttgggatttgtcgcaa-tgctgtgtttctgtatagtattgcacttgtcccggc 65
|||||||||||||| || |||| ||||||||| |||||| | ||| ||||||||||||
Sbjct: 7 acacaggttgggatcggttgcaaatgctgtgttcctgtatggagttgaacttgtcccggc 66
Query: 66 ctgttgagtttgg 78
|||||||||||||
Sbjct: 67 ctgttgagtttgg 79
>RF00464;mir-92;AAPN01258105.1/457-380 9258:Ornithorhynchus
anatinus (platypus)
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 1 ctttctacacaggttgggatttgtcgcaatgctgtgtttctgtatagtattgcacttgtc 60
||||||| ||||||||||| || |||||||| ||||| | || |||||||| |||||
Sbjct: 1 ctttctatgcaggttgggatcagttgcaatgctttgtttgtctacagtattgcgcttgtt 60
Query: 61 ccggcctgttgag 73
|||||||||||||
Sbjct: 61 ccggcctgttgag 73
>RF00464;mir-92;AANN01710722.1/2155-2112 9365:Erinaceus europaeus
(western European hedgehog)
Length = 44
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 29 atgctgtgtttctgtatagtattgcacttgtcc 61
||||||||||||||||| |||||||||||||||
Sbjct: 12 atgctgtgtttctgtatggtattgcacttgtcc 44
>RF00464;mir-92;CAAK05029381.1/12544-12621 7955:Danio rerio
(zebrafish)
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 1 ctttctacacaggttgggatttgtcgcaatgctgtgtttctgtatagtattgcacttgtc 60
|||||| | |||||||||||| || |||||||||||| | | | ||||||||||||||
Sbjct: 1 ctttctgcgcaggttgggattggtagcaatgctgtgtgttttgaaggtattgcacttgtc 60
Query: 61 ccggcctgt 69
|||||||||
Sbjct: 61 ccggcctgt 69
>RF00464;mir-92;AANH01005312.1/95223-95146 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgttgag 73
|||||||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgttgag 73
>RF00464;mir-92;BAAE01210639.1/1758-1680 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgttgag 73
|||||||||||||||||||||||||||
Sbjct: 48 gtattgcacttgtcccggcctgttgag 74
>RF00464;mir-92;ABDC01275774.1/2124-2045 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 41 tgtatagtattgcacttgtcccggcctgt 69
|||| ||||||||||||||||||||||||
Sbjct: 43 tgtaaagtattgcacttgtcccggcctgt 71
>RF00464;mir-92;ABRQ01318667.1/1002-921 9813:Procavia capensis
(cape rock hyrax)
Length = 82
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 43 tatagtattgcacttgtcccggcct 67
|||||||||||||||||||||||||
Sbjct: 47 tatagtattgcacttgtcccggcct 71
>RF00464;mir-92;ABQF01018395.1/1757-1837 59729:Taeniopygia guttata
Length = 81
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 41 tgtatagtattgcacttgtcccggcctgt 69
|||| ||||||||||||||||||||||||
Sbjct: 44 tgtagagtattgcacttgtcccggcctgt 72
>RF00464;mir-92;ABQO010442129.1/1114-1031 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 agtattgcacttgtcccggcctgt 69
||||||||||||||||||||||||
Sbjct: 52 agtattgcacttgtcccggcctgt 75
>RF00464;mir-92;AAFR03056382.1/2360-2443 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 agtattgcacttgtcccggcctgt 69
||||||||||||||||||||||||
Sbjct: 52 agtattgcacttgtcccggcctgt 75
>RF00464;mir-92;FP015951.3/28649-28570 9823:Sus scrofa (pig)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 agtattgcacttgtcccggcctgt 69
||||||||||||||||||||||||
Sbjct: 48 agtattgcacttgtcccggcctgt 71
>RF00464;mir-92;AACZ02222074.1/3149-3227 9598:Pan troglodytes
(chimpanzee)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 agtattgcacttgtcccggcctgt 69
||||||||||||||||||||||||
Sbjct: 47 agtattgcacttgtcccggcctgt 70
>RF00464;mir-92;AAGW01169230.1/2308-2388 9986:Oryctolagus
cuniculus (rabbit)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 agtattgcacttgtcccggcctgt 69
||||||||||||||||||||||||
Sbjct: 49 agtattgcacttgtcccggcctgt 72
>RF00464;mir-92;AAIY01238597.1/3124-3045 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 agtattgcacttgtcccggcctgt 69
||||||||||||||||||||||||
Sbjct: 48 agtattgcacttgtcccggcctgt 71
>RF00464;mir-92;AAWZ01041388.1/1227-1308 28377:Anolis carolinensis
(green anole)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 agtattgcacttgtcccggcctgt 69
||||||||||||||||||||||||
Sbjct: 50 agtattgcacttgtcccggcctgt 73
>RF00464;mir-92;CAAK05051440.1/15632-15557 7955:Danio rerio
(zebrafish)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 agtattgcacttgtcccggcctgt 69
||||||||||||||||||||||||
Sbjct: 44 agtattgcacttgtcccggcctgt 67
>RF00464;mir-92;AAPN01314920.1/824-749 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgttgag 73
|||||||||||||||| ||||||||||
Sbjct: 45 gtattgcacttgtcccagcctgttgag 71
>RF00464;mir-92;AAPN01101011.1/3771-3698 9258:Ornithorhynchus
anatinus (platypus)
Length = 74
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgttgag 73
|||||||||||||||| ||||||||||
Sbjct: 46 gtattgcacttgtcccagcctgttgag 72
>RF00464;mir-92;AAHY01210291.1/5443-5364 10090:Mus musculus (house
mouse)
Length = 80
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 agtattgcacttgtcccggcctg 68
|||||||||||||||||||||||
Sbjct: 48 agtattgcacttgtcccggcctg 70
>RF00464;mir-92;CAAB01003114.1/24863-24787 31033:Takifugu rubripes
Length = 77
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 46 gtattgcacttgtcccggcctgt 68
>RF00464;mir-92;CAAB01000095.1/4670-4593 31033:Takifugu rubripes
Length = 78
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69
>RF00464;mir-92;AANH01000396.1/150776-150700 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 46 gtattgcacttgtcccggcctgt 68
>RF00464;mir-92;BAAE01057416.1/1171-1095 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 46 gtattgcacttgtcccggcctgt 68
>RF00464;mir-92;AAPN01121175.1/4354-4275 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 48 tattgcacttgtcccggcctgttgag 73
|||||||||||||| |||||||||||
Sbjct: 50 tattgcacttgtcctggcctgttgag 75
>RF00464;mir-92;ABEP02031049.1/2682-2605 7739:Branchiostoma
floridae (Florida lancelet)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 agtattgcacttgtcccggcct 67
||||||||||||||||||||||
Sbjct: 46 agtattgcacttgtcccggcct 67
>RF00464;mir-92;AAGJ02142502.1/20488-20574 7668:Strongylocentrotus
purpuratus
Length = 87
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 tattgcacttgtcccggcctg 68
|||||||||||||||||||||
Sbjct: 57 tattgcacttgtcccggcctg 77
>RF00464;mir-92;AAZO01005488.1/5199-5120 121224:Pediculus humanus
corporis (human body louse)
Length = 80
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 43 tatagtattgcacttgtcccggcct 67
|||| ||||||||||||||||||||
Sbjct: 45 tataatattgcacttgtcccggcct 69
