miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31852_mmu-mir-129-1:mirbase
Length = 73
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttctctccacagtagtcaggaagcccttaccccaaa 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttctctcgacagtagtcaggaagcccttaccccaaa 64
Query: 65 aagtatct 72
||||||||
Sbjct: 65 aagtatct 72
>31853_mmu-mir-129-1:mirbase
Length = 73
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttctctccacagtagtcaggaagcccttaccccaaa 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttctctcgacagtagtcaggaagcccttaccccaaa 64
Query: 65 aagtatct 72
||||||||
Sbjct: 65 aagtatct 72
>27018_eca-mir-129a:mirbase
Length = 73
Score = 113 bits (57), Expect = 2e-26
Identities = 67/69 (97%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttc-tctccacagtagtcaggaagcccttaccccaa 63
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaa 64
Query: 64 aaagtatct 72
|||||||||
Sbjct: 65 aaagtatct 73
>27019_eca-mir-129a:mirbase
Length = 73
Score = 113 bits (57), Expect = 2e-26
Identities = 67/69 (97%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttc-tctccacagtagtcaggaagcccttaccccaa 63
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaa 64
Query: 64 aaagtatct 72
|||||||||
Sbjct: 65 aaagtatct 73
>27725_mml-mir-129:mirbase
Length = 72
Score = 113 bits (57), Expect = 2e-26
Identities = 67/69 (97%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttc-tctccacagtagtcaggaagcccttaccccaa 63
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 4 tctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaa 63
Query: 64 aaagtatct 72
|||||||||
Sbjct: 64 aaagtatct 72
>27726_mml-mir-129:mirbase
Length = 72
Score = 113 bits (57), Expect = 2e-26
Identities = 67/69 (97%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttc-tctccacagtagtcaggaagcccttaccccaa 63
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 4 tctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaa 63
Query: 64 aaagtatct 72
|||||||||
Sbjct: 64 aaagtatct 72
>28439_hsa-mir-129-1:mirbase
Length = 72
Score = 113 bits (57), Expect = 2e-26
Identities = 67/69 (97%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttc-tctccacagtagtcaggaagcccttaccccaa 63
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 4 tctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaa 63
Query: 64 aaagtatct 72
|||||||||
Sbjct: 64 aaagtatct 72
>30216_ptr-mir-129-1:mirbase
Length = 71
Score = 113 bits (57), Expect = 2e-26
Identities = 67/69 (97%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttc-tctccacagtagtcaggaagcccttaccccaa 63
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 3 tctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaa 62
Query: 64 aaagtatct 72
|||||||||
Sbjct: 63 aaagtatct 71
>30825_ppy-mir-129-1:mirbase
Length = 72
Score = 113 bits (57), Expect = 2e-26
Identities = 67/69 (97%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttc-tctccacagtagtcaggaagcccttaccccaa 63
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 4 tctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaa 63
Query: 64 aaagtatct 72
|||||||||
Sbjct: 64 aaagtatct 72
>33208_bta-mir-129-1:mirbase
Length = 72
Score = 113 bits (57), Expect = 2e-26
Identities = 67/69 (97%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttc-tctccacagtagtcaggaagcccttaccccaa 63
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 4 tctttttgcggtctgggcttgctgttcctctctacagtagtcaggaagcccttaccccaa 63
Query: 64 aaagtatct 72
|||||||||
Sbjct: 64 aaagtatct 72
>33978_ssc-mir-129b:mirbase
Length = 84
Score = 113 bits (57), Expect = 2e-26
Identities = 67/69 (97%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttc-tctccacagtagtcaggaagcccttaccccaa 63
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 10 tctttttgcggtctgggcttgctgttcctctctacagtagtcaggaagcccttaccccaa 69
Query: 64 aaagtatct 72
|||||||||
Sbjct: 70 aaagtatct 78
>26696_cfa-mir-129-1:mirbase
Length = 65
Score = 105 bits (53), Expect = 4e-24
Identities = 63/65 (96%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 6 ctttttgcggtctgggcttgctgttc-tctccacagtagtcaggaagcccttaccccaaa 64
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaaa 60
Query: 65 aagta 69
|||||
Sbjct: 61 aagta 65
>31484_oan-mir-129:mirbase
Length = 128
Score = 97.6 bits (49), Expect = 1e-21
Identities = 65/69 (94%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttc-tctccacagtagtcaggaagcccttaccccaa 63
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 29 tctttttgcggtctgggcttgctgttcctctaatcagtagtcaggaagcccttaccccaa 88
Query: 64 aaagtatct 72
|||||||||
Sbjct: 89 aaagtatct 97
>27379_mdo-mir-129:mirbase
Length = 74
Score = 89.7 bits (45), Expect = 2e-19
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttctctcca-cagtagtcaggaagcccttaccccaa 63
||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttccttaaatcagtagtcaggaagcccttaccccaa 64
Query: 64 aaagtatct 72
|||||||||
Sbjct: 65 aaagtatct 73
>34594_fru-mir-129-2:mirbase
Length = 73
Score = 87.7 bits (44), Expect = 9e-19
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 1 tgggtctttttgcggtctgggcttgctgttctctccacagtagtcaggaagcccttaccc 60
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 1 tgggtctttttgcggtctgggcttgctgttcctaaggcagtagccaggaagcccttaccc 60
Query: 61 caaaaagtatct 72
||||||||||||
Sbjct: 61 caaaaagtatct 72
>34287_dre-mir-129-1:mirbase
Length = 90
Score = 85.7 bits (43), Expect = 4e-18
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 3 ggtctttttgcggtctgggcttgctgttctctccac-agtagtcaggaagcccttacccc 61
||||||||||||||||||||||||||||| | || ||||| |||||||||||||||||
Sbjct: 11 ggtctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttacccc 70
Query: 62 aaaaagtatct 72
|||||||||||
Sbjct: 71 aaaaagtatct 81
>34741_tni-mir-129-2:mirbase
Length = 71
Score = 85.7 bits (43), Expect = 4e-18
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 2 gggtctttttgcggtctgggcttgctgttctctccacagtagtcaggaagcccttacccc 61
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 1 gggtctttttgcggtctgggcttgctgttcctaaggcagtagccaggaagcccttacccc 60
Query: 62 aaaaagtatct 72
|||||||||||
Sbjct: 61 aaaaagtatct 71
>25771_xtr-mir-129-2:mirbase
Length = 82
Score = 61.9 bits (31), Expect = 5e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 ctttttgcggtctgggcttgctgttctc-tccacagtagtcaggaagcccttaccccaaa 64
|||||||||||||||||||||||||||| || |||| ||||||||||||| ||||||
Sbjct: 9 ctttttgcggtctgggcttgctgttctcaatcaaagtatccaggaagcccttatcccaaa 68
Query: 65 aag 67
|||
Sbjct: 69 aag 71
>34740_tni-mir-129-1:mirbase
Length = 85
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttctct 34
||||||||||||||||||||||||||||||
Sbjct: 13 tctttttgcggtctgggcttgctgttctct 42
>34288_dre-mir-129-2:mirbase
Length = 87
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttctc 33
|||||||||||||||||||||||||||||
Sbjct: 13 tctttttgcggtctgggcttgctgttctc 41
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 53 ggaagcccttaccccaaaaag 73
>34593_fru-mir-129-1:mirbase
Length = 89
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttct 32
||||||||||||||||||||||||||||
Sbjct: 13 tctttttgcggtctgggcttgctgttct 40
>25770_xtr-mir-129-1:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgt 29
|||||||||||||||||||||||||
Sbjct: 13 tctttttgcggtctgggcttgctgt 37
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 55 ggaagcccttaccccaaaaag 75
>26458_tgu-mir-129:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgt 29
|||||||||||||||||||||||||
Sbjct: 10 tctttttgcggtctgggcttgctgt 34
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 52 ggaagcccttaccccaaaaag 72
>27020_eca-mir-129b:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgt 29
|||||||||||||||||||||||||
Sbjct: 6 tctttttgcggtctgggcttgctgt 30
>27021_eca-mir-129b:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgt 29
|||||||||||||||||||||||||
Sbjct: 6 tctttttgcggtctgggcttgctgt 30
>27727_mml-mir-129-2:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgt 29
|||||||||||||||||||||||||
Sbjct: 15 tctttttgcggtctgggcttgctgt 39
>28440_hsa-mir-129-2:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgt 29
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
>28441_hsa-mir-129-2:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgt 29
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
>30217_ptr-mir-129-2:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgt 29
|||||||||||||||||||||||||
Sbjct: 13 tctttttgcggtctgggcttgctgt 37
>30826_ppy-mir-129-2:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgt 29
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
>31854_mmu-mir-129-2:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgt 29
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
>31855_mmu-mir-129-2:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgt 29
|||||||||||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgt 38
>32730_rno-mir-129-2:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgt 29
|||||||||||||||||||||||||
Sbjct: 18 tctttttgcggtctgggcttgctgt 42
>33209_bta-mir-129-2:mirbase
Length = 94
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgt 29
|||||||||||||||||||||||||
Sbjct: 15 tctttttgcggtctgggcttgctgt 39
>33210_bta-mir-129-2:mirbase
Length = 94
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgt 29
|||||||||||||||||||||||||
Sbjct: 15 tctttttgcggtctgggcttgctgt 39
>33977_ssc-mir-129a:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgt 29
|||||||||||||||||||||||||
Sbjct: 10 tctttttgcggtctgggcttgctgt 34
>26697_cfa-mir-129-2:mirbase
Length = 63
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 ctttttgcggtctgggcttgctgt 29
||||||||||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgt 24
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ggaagcccttaccccaaaaag 67
|||||||||||||||||||||
Sbjct: 41 ggaagcccttaccccaaaaag 61
>25478_pma-mir-129a:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tctttttgcggtctgggcttgctgttc 31
|||||||||||| ||||||||||||||
Sbjct: 14 tctttttgcggtttgggcttgctgttc 40
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 aagcccttaccccaaaaag 67
|||||||||||||||||||
Sbjct: 55 aagcccttaccccaaaaag 73
