miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47115_ath-miRf10015-akr:pmrd
Length = 98
Score = 137 bits (69), Expect = 1e-33
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 1 gagtgataagctaaagtcttcttttcttccttgtgctcgagtgtctggttgagtgcggaa 60
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 gagtgttaagctggagtcttcttttcttccttgtgctcgagtgtctggttgagtgcggaa 66
Query: 61 tggagaagactctgaagctagcagt 85
||||||||||||||||||| |||||
Sbjct: 67 tggagaagactctgaagctggcagt 91
>47187_ath-miRf10087-akr:pmrd
Length = 96
Score = 129 bits (65), Expect = 3e-31
Identities = 80/85 (94%)
Strand = Plus / Plus
Query: 1 gagtgataagctaaagtcttcttttcttccttgtgctcgagtgtctggttgagtgcggaa 60
|||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 6 gagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtgcggaa 65
Query: 61 tggagaagactctgaagctagcagt 85
||||||||||||||||||| |||||
Sbjct: 66 tggagaagactctgaagctggcagt 90
>47615_ath-miRf10515-akr:pmrd
Length = 90
Score = 125 bits (63), Expect = 5e-30
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 1 gagtgataagctaaagtcttcttttcttccttgtgctcgagtgtctggttgagtgcggaa 60
||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3 gagtgattagctggagtcttcttttcttccttgtgcttgagtgtctggttgagtgcggaa 62
Query: 61 tggagaagactctgaagct 79
|||||||||||||||||||
Sbjct: 63 tggagaagactctgaagct 81
>48180_ath-miRf11080-akr:pmrd
Length = 235
Score = 121 bits (61), Expect = 8e-29
Identities = 64/65 (98%)
Strand = Plus / Minus
Query: 15 agtcttcttttcttccttgtgctcgagtgtctggttgagtgcggaatggagaagactctg 74
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 187 agtcttcttttcttccttgtgcttgagtgtctggttgagtgcggaatggagaagactctg 128
Query: 75 aagct 79
|||||
Sbjct: 127 aagct 123
>47725_ath-miRf10625-akr:pmrd
Length = 92
Score = 121 bits (61), Expect = 8e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 15 agtcttcttttcttccttgtgctcgagtgtctggttgagtgcggaatggagaagactctg 74
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 21 agtcttcttttcttccttgtgctcgagtgtctagttgagtgcggaatggagaagactctg 80
Query: 75 aagct 79
|||||
Sbjct: 81 aagct 85
>47645_ath-miRf10545-akr:pmrd
Length = 94
Score = 121 bits (61), Expect = 8e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 15 agtcttcttttcttccttgtgctcgagtgtctggttgagtgcggaatggagaagactctg 74
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 19 agtcttcttttcttccttgtgctcgagtgtctggttgagtgcgaaatggagaagactctg 78
Query: 75 aagct 79
|||||
Sbjct: 79 aagct 83
>47125_ath-miRf10025-akr:pmrd
Length = 94
Score = 113 bits (57), Expect = 2e-26
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 15 agtcttcttttcttccttgtgctcgagtgtctggttgagtgcggaatggagaagactctg 74
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 19 agtcttcttttcttccttgtgctcgagtgtctagttgagtgcggaatgaagaagactctg 78
Query: 75 aagct 79
|||||
Sbjct: 79 aagct 83
>47888_ath-miRf10788-akr:pmrd
Length = 194
Score = 105 bits (53), Expect = 5e-24
Identities = 62/65 (95%)
Strand = Plus / Minus
Query: 15 agtcttcttttcttccttgtgctcgagtgtctggttgagtgcggaatggagaagactctg 74
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 143 agtcttcttttcttccttgtgctcgagtgtctggttaagtgcggaatgaagaaggctctg 84
Query: 75 aagct 79
|||||
Sbjct: 83 aagct 79
>47247_ath-miRf10147-akr:pmrd
Length = 94
Score = 105 bits (53), Expect = 5e-24
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 15 agtcttcttttcttccttgtgctcgagtgtctggttgagtgcggaatggagaagactctg 74
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 19 agtcttcttttcttccttgtgctcgagtgtatggttgagtgcggaatgaagaaggctctg 78
Query: 75 aagct 79
|||||
Sbjct: 79 aagct 83
>47304_ath-miRf10204-akr:pmrd
Length = 132
Score = 97.6 bits (49), Expect = 1e-21
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 15 agtcttcttttcttccttgtgctcgagtgtctggttgagtgcggaatggagaagactctg 74
||||||||| ||||||||||||||| |||||||||||||||||||||| ||||| |||||
Sbjct: 39 agtcttcttatcttccttgtgctcgtgtgtctggttgagtgcggaatgaagaaggctctg 98
Query: 75 aagct 79
|||||
Sbjct: 99 aagct 103
>47525_ath-miRf10425-akr:pmrd
Length = 98
Score = 89.7 bits (45), Expect = 3e-19
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 1 gagtgataagctaaagtcttcttttcttccttgtgctcgagtgtctggttgagtgcggaa 60
||||||| |||| ||||||||| |||||||| ||||||||||||| ||||||||| ||
Sbjct: 7 gagtgattagctggagtcttcttctcttccttatgctcgagtgtcttgttgagtgcagat 66
Query: 61 tggagaagactctgaagctagcagt 85
| ||||||||||||||||| |||||
Sbjct: 67 ttgagaagactctgaagctggcagt 91
>48099_ath-miRf10999-akr:pmrd
Length = 148
Score = 87.7 bits (44), Expect = 1e-18
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 15 agtcttcttttcttccttgtgctcgagtgtctggttgagtgcggaatggagaagactctg 74
||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 48 agtcttcttctcttcctcatgctcgagtgtctggttgagtgcggaatcgagaagactcta 107
Query: 75 aagc 78
||||
Sbjct: 108 aagc 111
>47488_ath-miRf10388-akr:pmrd
Length = 148
Score = 87.7 bits (44), Expect = 1e-18
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 15 agtcttcttttcttccttgtgctcgagtgtctggttgagtgcggaatggagaagactctg 74
||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 48 agtcttcttctcttcctcatgctcgagtgtctggttgagtgcggaatcgagaagactcta 107
Query: 75 aagc 78
||||
Sbjct: 108 aagc 111
>47369_ath-miRf10269-akr:pmrd
Length = 91
Score = 87.7 bits (44), Expect = 1e-18
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 15 agtcttcttttcttccttgtgctcgagtgtctggttgagtgcgg 58
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 agtcttcttttcttccttgtgctcgagtgtctggttgagtgcgg 91
>47494_ath-miRf10394-akr:pmrd
Length = 96
Score = 81.8 bits (41), Expect = 7e-17
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 1 gagtgataagctaaagtcttcttttcttccttgtgctcgagtgtctggttgagtgcggaa 60
||||| |||||| |||||||||||||||||| ||||||||||||| ||||| ||| |||
Sbjct: 6 gagtggtaagctggagtcttcttttcttccttttgctcgagtgtctagttgaatgcagaa 65
Query: 61 tggagaagactctgaagctagcagt 85
| ||||||||| |||||| |||||
Sbjct: 66 tatagaagactccgaagctggcagt 90
>47325_ath-miRf10225-akr:pmrd
Length = 84
Score = 81.8 bits (41), Expect = 7e-17
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 18 cttcttttcttccttgtgctcgagtgtctggttgagtgcgg 58
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 cttcttttcttccttgtgctcgagtgtctggttgagtgcgg 84
>47246_ath-miRf10146-akr:pmrd
Length = 91
Score = 79.8 bits (40), Expect = 3e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 15 agtcttcttttcttccttgtgctcgagtgtctggttgagtgcgg 58
|||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 48 agtcttcttttcttccttgtgctcgagtgtatggttgagtgcgg 91
>47123_ath-miRf10023-akr:pmrd
Length = 91
Score = 79.8 bits (40), Expect = 3e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 17 tcttcttttcttccttgtgctcgagtgtctggttgagtgc 56
||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 tcttcttttcttccttgtgctcgagtgtctggttgagtgc 89
>47186_ath-miRf10086-akr:pmrd
Length = 85
Score = 77.8 bits (39), Expect = 1e-15
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 1 gagtgataagctaaagtcttcttttcttccttgtgctcgagtgtctggttgagtg 55
|||||||||||| ||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 31 gagtgataagctggagtcttcttctcttccttgtgctcgattgtctggttgagtg 85
>47372_ath-miRf10272-akr:pmrd
Length = 91
Score = 75.8 bits (38), Expect = 4e-15
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 15 agtcttcttttcttccttgtgctcgagtgtctggttgagtgc 56
|||||||||||| |||||||||||||||||||||||||||||
Sbjct: 48 agtcttcttttcctccttgtgctcgagtgtctggttgagtgc 89
>47253_ath-miRf10153-akr:pmrd
Length = 91
Score = 71.9 bits (36), Expect = 7e-14
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 1 gagtgataagctaaagtcttcttttcttccttgtgctcgagtgtctggttgagtgc 56
|||||||| ||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 34 gagtgatatgctggagtcttctattcttccttgtgctcgagtgtctagttgagtgc 89
>47242_ath-miRf10142-akr:pmrd
Length = 91
Score = 67.9 bits (34), Expect = 1e-12
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 1 gagtgataagctaaagtcttcttttcttccttgtgctcgagtgtctggttgagtgcgg 58
||||||| ||| ||||||||||| ||||||| ||||||| |||||||||||||||||
Sbjct: 34 gagtgatgagccaaagtcttcttctcttcctgatgctcgaatgtctggttgagtgcgg 91
>48098_ath-miRf10998-akr:pmrd
Length = 140
Score = 63.9 bits (32), Expect = 2e-11
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 15 agtcttcttttcttccttgtgctcgagtgtctggttgagtgcggaatggagaagactctg 74
||||||||| |||| || ||||||| |||||||||||||||||||| ||||||| |||
Sbjct: 97 agtcttcttctctttctcatgctcgaatgtctggttgagtgcggaatcgagaagaatcta 38
Query: 75 aagc 78
||||
Sbjct: 37 aagc 34
>47818_ath-miRf10718-akr:pmrd
Length = 148
Score = 63.9 bits (32), Expect = 2e-11
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 15 agtcttcttttcttccttgtgctcgagtgtctggttgagtgcggaatggagaagactctg 74
||||||||| |||| || ||||||| |||||||||||||||||||| ||||||| |||
Sbjct: 48 agtcttcttctctttctcatgctcgaatgtctggttgagtgcggaatcgagaagaatcta 107
Query: 75 aagc 78
||||
Sbjct: 108 aagc 111
>47173_ath-miRf10073-akr:pmrd
Length = 148
Score = 63.9 bits (32), Expect = 2e-11
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 15 agtcttcttttcttccttgtgctcgagtgtctggttgagtgcggaatggagaagactctg 74
||||||||| |||| || ||||||| |||||||||||||||||||| ||||||| |||
Sbjct: 48 agtcttcttctctttctcatgctcgaatgtctggttgagtgcggaatcgagaagaatcta 107
Query: 75 aagc 78
||||
Sbjct: 108 aagc 111
>47172_ath-miRf10072-akr:pmrd
Length = 148
Score = 63.9 bits (32), Expect = 2e-11
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 15 agtcttcttttcttccttgtgctcgagtgtctggttgagtgcggaatggagaagactctg 74
||||||||| |||| || ||||||| |||||||||||||||||||| ||||||| |||
Sbjct: 48 agtcttcttctctttctcatgctcgaatgtctggttgagtgcggaatcgagaagaatcta 107
Query: 75 aagc 78
||||
Sbjct: 108 aagc 111
>47269_ath-miRf10169-akr:pmrd
Length = 253
Score = 58.0 bits (29), Expect = 1e-09
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 39 gagtgtctggttgagtgcggaatggagaagactctgaagctagca 83
||||||||||||||||||| |||||||| || ||||||||||||
Sbjct: 5 gagtgtctggttgagtgcgaaatggagatgatgctgaagctagca 49
>47903_ath-miRf10803-akr:pmrd
Length = 149
Score = 56.0 bits (28), Expect = 4e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 46 tggttgagtgcggaatggagaagactctgaagctagcagt 85
||||||||||||||||||||||||| ||||||| |||||
Sbjct: 5 tggttgagtgcggaatggagaagacagtgaagctggcagt 44
