miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00130;mir-192;AC127556.4/107222-107331 10090:Mus musculus (house
mouse)
Length = 110
Score = 167 bits (84), Expect = 4e-41
Identities = 102/108 (94%)
Strand = Plus / Plus
Query: 3 caagatggagtgcacagggctctgacctatgaattgacagccagtactctgatctcgcct 62
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 3 caagatggcgtgcacagggctctgacctatgaattgacagccagtactcttttctctcct 62
Query: 63 ctggctgccagttccataggtcacaggtatgttcgcctcaatgccagc 110
|||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 63 ctggctgccaattccataggtcacaggtatgttcacctcaatgccagc 110
>RF00130;mir-192;ABRP01030089.1/479-588 132908:Pteropus vampyrus
(large flying fox)
Length = 110
Score = 143 bits (72), Expect = 5e-34
Identities = 90/96 (93%)
Strand = Plus / Plus
Query: 10 gagtgcacagggctctgacctatgaattgacagccagtactctgatctcgcctctggctg 69
||||||||||||||||||||||||| |||||||||||| |||| |||| ||||||||||
Sbjct: 10 gagtgcacagggctctgacctatgagttgacagccagtgctcttgtctcccctctggctg 69
Query: 70 ccagttccataggtcacaggtatgttcgcctcaatg 105
||| ||||||||||||||||||||||||||||||||
Sbjct: 70 ccaattccataggtcacaggtatgttcgcctcaatg 105
>RF00130;mir-192;ABRQ01130986.1/8285-8394 9813:Procavia capensis
(cape rock hyrax)
Length = 110
Score = 133 bits (67), Expect = 5e-31
Identities = 91/99 (91%)
Strand = Plus / Plus
Query: 10 gagtgcacagggctctgacctatgaattgacagccagtactctgatctcgcctctggctg 69
|||||||||||||||||||||||||||||||||||||| | || ||| ||| ||||||
Sbjct: 10 gagtgcacagggctctgacctatgaattgacagccagtgccctcggctcccctttggctg 69
Query: 70 ccagttccataggtcacaggtatgttcgcctcaatgcca 108
||| |||||||||||||||||||||||||||||||||||
Sbjct: 70 ccaattccataggtcacaggtatgttcgcctcaatgcca 108
>RF00130;mir-192;AAYZ01125558.1/348-240 9978:Ochotona princeps
(American pika)
Length = 109
Score = 129 bits (65), Expect = 8e-30
Identities = 93/101 (92%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 10 gagtgcacagggctctgacctatgaattgacagccagtactctgatctcgcctctggctg 69
|||||||||||||||||||||||||||||||||||||| | | | ||| ||||||||||
Sbjct: 10 gagtgcacagggctctgacctatgaattgacagccagtgccccg-tctgccctctggctg 68
Query: 70 ccagttccataggtcacaggtatgttcgcctcaatgccagc 110
||| || ||||||||||||||||||||||||||||||||||
Sbjct: 69 ccaattgcataggtcacaggtatgttcgcctcaatgccagc 109
>RF00130;mir-192;AANN01720898.1/1196-1090 9365:Erinaceus europaeus
(western European hedgehog)
Length = 107
Score = 117 bits (59), Expect = 3e-26
Identities = 91/101 (90%), Gaps = 3/101 (2%)
Strand = Plus / Plus
Query: 10 gagtgcacagggctctgacctatgaattgacagccagtactctgatctcgcctctggctg 69
|||||| |||||||||||||||||| |||||||||||| | || ||| ||||||||||
Sbjct: 10 gagtgcgcagggctctgacctatgacttgacagccagtgccct---ctcccctctggctg 66
Query: 70 ccagttccataggtcacaggtatgttcgcctcaatgccagc 110
||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 67 ccaattccataggtcacaggtatgttcacctcaatgccagc 107
>RF00130;mir-192;ABRO01037016.1/11465-11572 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 108
Score = 113 bits (57), Expect = 5e-25
Identities = 89/97 (91%), Gaps = 2/97 (2%)
Strand = Plus / Plus
Query: 10 gagtgcacagggctctgacctatgaattgacagccagtactctgatctcgcctctggctg 69
||||||||| |||||||||||||||||||||||||||| | ||| |||| || |||||||
Sbjct: 10 gagtgcacaaggctctgacctatgaattgacagccagtgcgctg-tctcccc-ctggctg 67
Query: 70 ccagttccataggtcacaggtatgttcgcctcaatgc 106
||| ||||||||||||||||||||||||||| |||||
Sbjct: 68 ccaattccataggtcacaggtatgttcgcctgaatgc 104
>RF00130;mir-192;AAIY01704218.1/882-773 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 110
Score = 105 bits (53), Expect = 1e-22
Identities = 89/101 (88%)
Strand = Plus / Plus
Query: 10 gagtgcacagggctctgacctatgaattgacagccagtactctgatctcgcctctggctg 69
||||||||| | |||||||||||||||||||||||||| | || ||| ||||||||||
Sbjct: 10 gagtgcacaagtctctgacctatgaattgacagccagtgccttgggctcccctctggctg 69
Query: 70 ccagttccataggtcacaggtatgttcgcctcaatgccagc 110
||| | |||||||||||||||||||| ||||| ||||||||
Sbjct: 70 ccaataccataggtcacaggtatgtttgcctccatgccagc 110
>RF00130;mir-192;ABQO011016737.1/1874-1763 9315:Macropus eugenii
(tammar wallaby)
Length = 112
Score = 93.7 bits (47), Expect = 5e-19
Identities = 83/91 (91%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 19 gggctctgacct-atgaattgacagccagtactctgatctcgcct-ctggctgccagttc 76
|||||||||||| ||||||||||||||||||||| |||| | | |||||||||| |||
Sbjct: 20 gggctctgaccttatgaattgacagccagtactcat-tctccctttctggctgccaattc 78
Query: 77 cataggtcacaggtatgttcgcctcaatgcc 107
|||||||||||||||||||||||||||||||
Sbjct: 79 cataggtcacaggtatgttcgcctcaatgcc 109
>RF00130;mir-192;AAPE01041994.1/454-563 59463:Myotis lucifugus
(little brown bat)
Length = 110
Score = 75.8 bits (38), Expect = 1e-13
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 11 agtgcacagggctctgacctatgaattgacagccagtactctgatctcgcctctggctgc 70
||||||||||||||| ||||||||||||||||||| |||| | || |||||||||||
Sbjct: 11 agtgcacagggctcttccctatgaattgacagccaggtctcttgtttcccctctggctgc 70
Query: 71 cagttccataggtcacaggtatgttc 96
|| | ||||||| ||||||||||||
Sbjct: 71 caatggcataggtgacaggtatgttc 96
>RF00130;mir-192;CAAE01014650.1/773661-773759 99883:Tetraodon
nigroviridis
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 tgacctatgaattgacagccagta 48
||||||||||||||||||||||||
Sbjct: 18 tgacctatgaattgacagccagta 41
>RF00130;mir-192;CAAB01000046.1/113260-113358 31033:Takifugu
rubripes
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 tgacctatgaattgacagccagta 48
||||||||||||||||||||||||
Sbjct: 18 tgacctatgaattgacagccagta 41
>RF00130;mir-192;BX248510.4/109218-109112 7955:Danio rerio
(zebrafish)
Length = 107
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 25 tgacctatgaattgacagccagt 47
|||||||||||||||||||||||
Sbjct: 24 tgacctatgaattgacagccagt 46
>RF00130;mir-192;BAAF04033818.1/3323-3429 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 25 tgacctatgaattgacagccagt 47
|||||||||||||||||||||||
Sbjct: 25 tgacctatgaattgacagccagt 47
