miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31927_mmu-mir-202:mirbase
Length = 72
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
Query: 61 ggaaaatggagc 72
|||| |||||||
Sbjct: 61 ggaagatggagc 72
>31928_mmu-mir-202:mirbase
Length = 72
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
Query: 61 ggaaaatggagc 72
|||| |||||||
Sbjct: 61 ggaagatggagc 72
>28521_hsa-mir-202:mirbase
Length = 110
Score = 107 bits (54), Expect = 1e-24
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct: 20 gttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatg 79
Query: 61 ggaaaa 66
||||||
Sbjct: 80 ggaaaa 85
>30280_ptr-mir-202:mirbase
Length = 109
Score = 107 bits (54), Expect = 1e-24
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct: 20 gttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatg 79
Query: 61 ggaaaa 66
||||||
Sbjct: 80 ggaaaa 85
>33281_bta-mir-202:mirbase
Length = 99
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
|||||||||||||||||||||||||||||| || ||||| |||||||||| ||| |||||
Sbjct: 11 gttcctttttcctatgcatatacttctttgagggtctggcctaaagaggtgtagggcatg 70
Query: 61 ggaaaatgg 69
|||||||||
Sbjct: 71 ggaaaatgg 79
>25993_gga-mir-202:mirbase
Length = 89
Score = 81.8 bits (41), Expect = 6e-17
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
|||||||||||||||||||||||||||||| | | || |||||||||| |||| |||||
Sbjct: 8 gttcctttttcctatgcatatacttctttgagagtttgatctaaagaggcatagagcatg 67
Query: 61 ggaaaatgg 69
|||||||||
Sbjct: 68 ggaaaatgg 76
>26762_cfa-mir-202:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
|||||||||||||||||||||||||||||| || ||||| || ||||||| || |||||
Sbjct: 1 gttcctttttcctatgcatatacttctttgagggtctggcctgaagaggtgtaaggcatg 60
Query: 61 ggaaaa 66
||||||
Sbjct: 61 ggaaaa 66
>26500_tgu-mir-202-1:mirbase
Length = 70
Score = 73.8 bits (37), Expect = 1e-14
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 5 ctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatgggaa 64
|||||||||||||||||||||||||| | || ||||||||||||||| |||||||||
Sbjct: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
Query: 65 aatgg 69
|||||
Sbjct: 61 aatgg 65
>26501_tgu-mir-202-2:mirbase
Length = 70
Score = 73.8 bits (37), Expect = 1e-14
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 5 ctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatgggaa 64
|||||||||||||||||||||||||| | || ||||||||||||||| |||||||||
Sbjct: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
Query: 65 aatgg 69
|||||
Sbjct: 61 aatgg 65
>34033_ssc-mir-202:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 8e-10
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 9 ttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatgggaaa 65
|||||||||||||||||||||| || ||||| || ||||||| ||| ||||||||||
Sbjct: 13 ttcctatgcatatacttctttgagggtctggcctgaagaggtgtag-gcatgggaaa 68
>34358_dre-mir-202:mirbase
Length = 76
Score = 58.0 bits (29), Expect = 8e-10
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
||||||||||||||||||||||| |||||| ||| | |||||||| |||| |||||
Sbjct: 3 gttcctttttcctatgcatatacctctttgacatgctgctttaaagaggcatagggcatg 62
Query: 61 ggaaaatgg 69
|||||||||
Sbjct: 63 ggaaaatgg 71
>25822_xtr-mir-202-1:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gttcctttttcctatgcatatacttctttg 30
||||||||||||||||||||||| ||||||
Sbjct: 7 gttcctttttcctatgcatatacctctttg 36
>25823_xtr-mir-202-2:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gttcctttttcctatgcatatacttctttg 30
||||||||||||||||||||||| ||||||
Sbjct: 7 gttcctttttcctatgcatatacctctttg 36
>34630_fru-mir-202:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tcctttttcctatgcatatac 23
|||||||||||||||||||||
Sbjct: 1 tcctttttcctatgcatatac 21
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 42 taaagaggtatagcgcatgggaaaatgg 69
|||||||| |||| ||||||||||||||
Sbjct: 40 taaagaggcatagggcatgggaaaatgg 67
>34777_tni-mir-202:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tcctttttcctatgcatatac 23
|||||||||||||||||||||
Sbjct: 1 tcctttttcctatgcatatac 21
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 42 taaagaggtatagcgcatgggaaaatgg 69
|||||||| |||| ||||||||||||||
Sbjct: 40 taaagaggcatagggcatgggaaaatgg 67
