miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32000_mmu-mir-335:mirbase
Length = 98
Score = 170 bits (86), Expect = 1e-43
Identities = 95/98 (96%)
Strand = Plus / Plus
Query: 1 tcttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgttttt 60
Query: 61 cattattgctcctgacctcctctcatttgttatagcca 98
||||||||||||||||| |||||||| ||||||||||
Sbjct: 61 cattattgctcctgaccccctctcatgggttatagcca 98
>32001_mmu-mir-335:mirbase
Length = 98
Score = 170 bits (86), Expect = 1e-43
Identities = 95/98 (96%)
Strand = Plus / Plus
Query: 1 tcttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgttttt 60
Query: 61 cattattgctcctgacctcctctcatttgttatagcca 98
||||||||||||||||| |||||||| ||||||||||
Sbjct: 61 cattattgctcctgaccccctctcatgggttatagcca 98
>33325_bta-mir-335:mirbase
Length = 92
Score = 131 bits (66), Expect = 1e-31
Identities = 82/87 (94%), Gaps = 4/87 (4%)
Strand = Plus / Plus
Query: 3 ttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttca 62
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 1 ttttgggcgggggtcaagagcaataacgaaaaatgtttgt----cataaaccgtttttca 56
Query: 63 ttattgctcctgacctcctctcatttg 89
|||||||||||||||||||||||||||
Sbjct: 57 ttattgctcctgacctcctctcatttg 83
>28584_hsa-mir-335:mirbase
Length = 94
Score = 125 bits (63), Expect = 6e-30
Identities = 85/92 (92%), Gaps = 4/92 (4%)
Strand = Plus / Plus
Query: 3 ttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttca 62
||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 3 ttttgagcgggggtcaagagcaataacgaaaaatgtttgt----cataaaccgtttttca 58
Query: 63 ttattgctcctgacctcctctcatttgttata 94
||||||||||||||||||||||||||| ||||
Sbjct: 59 ttattgctcctgacctcctctcatttgctata 90
>30332_ptr-mir-335:mirbase
Length = 93
Score = 125 bits (63), Expect = 6e-30
Identities = 85/92 (92%), Gaps = 4/92 (4%)
Strand = Plus / Plus
Query: 3 ttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttca 62
||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 2 ttttgagcgggggtcaagagcaataacgaaaaatgtttgt----cataaaccgtttttca 57
Query: 63 ttattgctcctgacctcctctcatttgttata 94
||||||||||||||||||||||||||| ||||
Sbjct: 58 ttattgctcctgacctcctctcatttgctata 89
>30952_ppy-mir-335:mirbase
Length = 92
Score = 125 bits (63), Expect = 6e-30
Identities = 85/92 (92%), Gaps = 4/92 (4%)
Strand = Plus / Plus
Query: 3 ttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttca 62
||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 1 ttttgagcgggggtcaagagcaataacgaaaaatgtttgt----cataaaccgtttttca 56
Query: 63 ttattgctcctgacctcctctcatttgttata 94
||||||||||||||||||||||||||| ||||
Sbjct: 57 ttattgctcctgacctcctctcatttgctata 88
>34060_ssc-mir-335:mirbase
Length = 80
Score = 125 bits (63), Expect = 6e-30
Identities = 79/84 (94%), Gaps = 4/84 (4%)
Strand = Plus / Plus
Query: 2 cttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttc 61
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1 cttttgggcgggggtcaagagcaataacgaaaaatgtttg----tcataaaccgtttttc 56
Query: 62 attattgctcctgacctcctctca 85
||||||||||||||||||||||||
Sbjct: 57 attattgctcctgacctcctctca 80
>27847_mml-mir-335:mirbase
Length = 88
Score = 121 bits (61), Expect = 1e-28
Identities = 80/86 (93%), Gaps = 4/86 (4%)
Strand = Plus / Plus
Query: 9 gcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttcattattg 68
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 3 gcgggggtcaagagcaataacgaaaaatgtttgt----cataaaccgtttttcattattg 58
Query: 69 ctcctgacctcctctcatttgttata 94
||||||||||||||||||||| ||||
Sbjct: 59 ctcctgacctcctctcatttgctata 84
>27128_eca-mir-335:mirbase
Length = 75
Score = 111 bits (56), Expect = 9e-26
Identities = 72/77 (93%), Gaps = 4/77 (5%)
Strand = Plus / Plus
Query: 9 gcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttcattattg 68
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 3 gcgggggtcaagagcaataacgaaaaatgtttgt----cataaaccgtttttcattattg 58
Query: 69 ctcctgacctcctctca 85
|||||||||||||||||
Sbjct: 59 ctcctgacctcctctca 75
>26804_cfa-mir-335:mirbase
Length = 58
Score = 81.8 bits (41), Expect = 8e-17
Identities = 57/62 (91%), Gaps = 4/62 (6%)
Strand = Plus / Plus
Query: 16 tcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttcattattgctcctga 75
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 1 tcaagagcaataacgaaaaatgtttgt----cataaaccgtttttcattattgctcctga 56
Query: 76 cc 77
||
Sbjct: 57 cc 58
