miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32002_mmu-mir-337:mirbase
Length = 97
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 agtgtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agtgtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccat 61
Query: 61 tcagctcctatatgatgcctttcttcacccccttca 96
||||||||||||||||||||||||||||||||||||
Sbjct: 62 tcagctcctatatgatgcctttcttcacccccttca 97
>32003_mmu-mir-337:mirbase
Length = 97
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 agtgtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agtgtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccat 61
Query: 61 tcagctcctatatgatgcctttcttcacccccttca 96
||||||||||||||||||||||||||||||||||||
Sbjct: 62 tcagctcctatatgatgcctttcttcacccccttca 97
>33030_rno-mir-3544:mirbase
Length = 88
Score = 168 bits (85), Expect = 5e-43
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 13 agttggggggtgggaacggcgtcatgcaggagttgattgcacagccattcagctcctata 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 agttggggggtgggaacggcgtcatgcaggagttgattgcacagccattcagctcctata 29
Query: 73 tgatgcctttcttcacccccttcaa 97
|||||||||||||||||||||||||
Sbjct: 28 tgatgcctttcttcacccccttcaa 4
>27848_mml-mir-337:mirbase
Length = 93
Score = 107 bits (54), Expect = 1e-24
Identities = 85/94 (90%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 4 gtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccattca 63
||||| || |||||||||||||||||||| |||| ||||||||||| |||||| || ||
Sbjct: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgat-gcacagttatcca 59
Query: 64 gctcctatatgatgcctttcttcacccccttcaa 97
|||||||||||||||||||||||| |||||||||
Sbjct: 60 gctcctatatgatgcctttcttcatccccttcaa 93
>27849_mml-mir-337:mirbase
Length = 93
Score = 107 bits (54), Expect = 1e-24
Identities = 85/94 (90%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 4 gtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccattca 63
||||| || |||||||||||||||||||| |||| ||||||||||| |||||| || ||
Sbjct: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgat-gcacagttatcca 59
Query: 64 gctcctatatgatgcctttcttcacccccttcaa 97
|||||||||||||||||||||||| |||||||||
Sbjct: 60 gctcctatatgatgcctttcttcatccccttcaa 93
>28586_hsa-mir-337:mirbase
Length = 93
Score = 107 bits (54), Expect = 1e-24
Identities = 85/94 (90%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 4 gtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccattca 63
||||| || |||||||||||||||||||| |||| ||||||||||| |||||| || ||
Sbjct: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgat-gcacagttatcca 59
Query: 64 gctcctatatgatgcctttcttcacccccttcaa 97
|||||||||||||||||||||||| |||||||||
Sbjct: 60 gctcctatatgatgcctttcttcatccccttcaa 93
>28585_hsa-mir-337:mirbase
Length = 93
Score = 107 bits (54), Expect = 1e-24
Identities = 85/94 (90%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 4 gtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccattca 63
||||| || |||||||||||||||||||| |||| ||||||||||| |||||| || ||
Sbjct: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgat-gcacagttatcca 59
Query: 64 gctcctatatgatgcctttcttcacccccttcaa 97
|||||||||||||||||||||||| |||||||||
Sbjct: 60 gctcctatatgatgcctttcttcatccccttcaa 93
>30953_ppy-mir-337:mirbase
Length = 93
Score = 107 bits (54), Expect = 1e-24
Identities = 85/94 (90%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 4 gtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccattca 63
||||| || |||||||||||||||||||| |||| ||||||||||| |||||| || ||
Sbjct: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgat-gcacagttatcca 59
Query: 64 gctcctatatgatgcctttcttcacccccttcaa 97
|||||||||||||||||||||||| |||||||||
Sbjct: 60 gctcctatatgatgcctttcttcatccccttcaa 93
>30954_ppy-mir-337:mirbase
Length = 93
Score = 107 bits (54), Expect = 1e-24
Identities = 85/94 (90%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 4 gtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccattca 63
||||| || |||||||||||||||||||| |||| ||||||||||| |||||| || ||
Sbjct: 1 gtagtcagtagttggggggtgggaacggcttcatacaggagttgat-gcacagttatcca 59
Query: 64 gctcctatatgatgcctttcttcacccccttcaa 97
|||||||||||||||||||||||| |||||||||
Sbjct: 60 gctcctatatgatgcctttcttcatccccttcaa 93
>30333_ptr-mir-337:mirbase
Length = 92
Score = 105 bits (53), Expect = 6e-24
Identities = 78/85 (91%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 13 agttggggggtgggaacggcgtcatgcaggagttgattgcacagccattcagctcctata 72
|||||||||||||||||||| |||| ||||||||||| |||||| || |||||||||||
Sbjct: 9 agttggggggtgggaacggcttcatacaggagttgat-gcacagttatccagctcctata 67
Query: 73 tgatgcctttcttcacccccttcaa 97
||||||||||||||| |||||||||
Sbjct: 68 tgatgcctttcttcatccccttcaa 92
