miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00765;mir-337;AC152063.5/103745-103649 10090:Mus musculus
(house mouse)
Length = 97
Score = 192 bits (97), Expect = 6e-49
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 agtgtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtgtagtgagaagttggggggtgggaacggcgtcatgcaggagttgattgcacagccat 60
Query: 61 tcagctcctatatgatgcctttcttcacccccttcaa 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcagctcctatatgatgcctttcttcacccccttcaa 97
>RF00765;mir-337;AAGW01106121.1/1459-1555 9986:Oryctolagus
cuniculus (rabbit)
Length = 97
Score = 113 bits (57), Expect = 4e-25
Identities = 78/85 (91%)
Strand = Plus / Plus
Query: 13 agttggggggtgggaacggcgtcatgcaggagttgattgcacagccattcagctcctata 72
||||||||| |||||||||| |||| |||||||||||||||||| ||| |||||||||||
Sbjct: 13 agttgggggatgggaacggcttcatacaggagttgattgcacagtcatccagctcctata 72
Query: 73 tgatgcctttcttcacccccttcaa 97
||||||||||||||| || ||||||
Sbjct: 73 tgatgcctttcttcatcctcttcaa 97
>RF00765;mir-337;AAGU02593771.1/135-230 9785:Loxodonta africana
(African savanna elephant)
Length = 96
Score = 91.7 bits (46), Expect = 2e-18
Identities = 74/82 (90%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 16 tggggggtgggaacggcgtcatgcaggagttgattgcacagccattcagctcctatatga 75
||||||||| ||||||| |||| ||||||||||| |||||| || ||||||||||||||
Sbjct: 16 tggggggtgagaacggcttcatacaggagttgat-gcacagttatccagctcctatatga 74
Query: 76 tgcctttcttcacccccttcaa 97
|||||||||||| |||||||||
Sbjct: 75 tgcctttcttcatccccttcaa 96
>RF00765;mir-337;AAGV021061352.1/555-650 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 96
Score = 79.8 bits (40), Expect = 6e-15
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 16 tggggggtgggaacggcgtcatgcaggagttgattgcacagccattcagctcctatatga 75
||||||||||||||||| |||| ||||||||| | | |||| || ||||||||||||||
Sbjct: 16 tggggggtgggaacggcttcatacaggagttggtgg-acagttatccagctcctatatga 74
Query: 76 tgcctttcttcacccccttc 95
|||||||||||| |||||||
Sbjct: 75 tgcctttcttcatccccttc 94
>RF00765;mir-337;ABRP01372708.1/596-690 132908:Pteropus vampyrus
(large flying fox)
Length = 95
Score = 56.0 bits (28), Expect = 9e-08
Identities = 69/80 (86%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 17 ggggggtgggaacggcgtcatgcaggagttgattgcacagccattcagctcctatatgat 76
|||||||| ||||||| |||| ||||||||||| || ||| | |||| |||| |||||
Sbjct: 17 ggggggtgagaacggcctcatccaggagttgat-gc-cagttacccagcgcctagatgat 74
Query: 77 gcctttcttcacccccttca 96
||||||||||||||||||||
Sbjct: 75 gcctttcttcacccccttca 94
>RF00765;mir-337;AAPY01359946.1/778-872 37347:Tupaia belangeri
(northern tree shrew)
Length = 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 14 gttggggggtgggaacggcgtcatgcaggagttgattgcacagccattcagctcctatat 73
|||||||||| |||||||| |||| ||||||||| | || ||| | | ||||||||||
Sbjct: 13 gttggggggtaggaacggcttcatacaggagttggt-gcgcagttacccggctcctatat 71
Query: 74 gatgcctttcttcaccc 90
|| ||||||||||||||
Sbjct: 72 gacgcctttcttcaccc 88
>RF00765;mir-337;AAYZ01391475.1/920-994 9978:Ochotona princeps
(American pika)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 cagctcctatatgatgcctttcttca 87
||||||||| ||||||||||||||||
Sbjct: 40 cagctcctagatgatgcctttcttca 65
