miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00763;mir-339;AC161058.2/17435-17530 10090:Mus musculus (house
mouse)
Length = 96
Score = 133 bits (67), Expect = 5e-31
Identities = 85/91 (93%)
Strand = Plus / Plus
Query: 1 acggggtggacaccgtccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctc 60
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acggggtggccactatccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctc 60
Query: 61 gacgacagagccagagtccacccctgcactg 91
| |||||||||| | ||||||||||||||||
Sbjct: 61 ggcgacagagccggtgtccacccctgcactg 91
>RF00763;mir-339;ABRO01112159.1/16392-16297 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 96
Score = 107 bits (54), Expect = 3e-23
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 11 caccgtccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcgacgacagag 70
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 11 caccctccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcgatgacagag 70
Query: 71 cc 72
||
Sbjct: 71 cc 72
>RF00763;mir-339;AANU01169837.1/4759-4854 9544:Macaca mulatta
(rhesus monkey)
Length = 96
Score = 105 bits (53), Expect = 1e-22
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcgacgacagagcc 72
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 16 tccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcgacgacagagcc 72
>RF00763;mir-339;AAPY01369443.1/857-762 37347:Tupaia belangeri
(northern tree shrew)
Length = 96
Score = 103 bits (52), Expect = 4e-22
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 1 acggggtggacaccgtccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctc 60
||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 acggggtggccactctccctgtcctccaggagctcacgtgcgcctgcctgtgagcgcctc 60
Query: 61 gacgacagagcc 72
||||||||||||
Sbjct: 61 gacgacagagcc 72
>RF00763;mir-339;AAKN02032234.1/100244-100339 10141:Cavia
porcellus (domestic guinea pig)
Length = 96
Score = 97.6 bits (49), Expect = 2e-20
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcgacgacagagcc 72
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 16 tccctgtcctccaggagctcacgtatgcctgcttgtgagcgcctcgatgacagagcc 72
>RF00763;mir-339;AAYZ01411525.1/5602-5507 9978:Ochotona princeps
(American pika)
Length = 96
Score = 97.6 bits (49), Expect = 2e-20
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcgacgacagagcc 72
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 16 tccctgtcctccaggagctcacgtcagcctgcctgtgagcgcctcgacgacagagcc 72
>RF00763;mir-339;AAGW01342133.1/1560-1466 9986:Oryctolagus
cuniculus (rabbit)
Length = 95
Score = 97.6 bits (49), Expect = 2e-20
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcgacgacagagcc 72
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 15 tccctgtcctccaggagctcacgtcggcctgcctgtgagcgcctcgacgacagagcc 71
>RF00763;mir-339;ABVD01762426.1/789-694 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 96
Score = 58.0 bits (29), Expect = 2e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcgacgacagagcc 72
|||||||||||||||||||||||| | ||| |||||||||||| || | |||||||
Sbjct: 16 tccctgtcctccaggagctcacgtgggtctggctgtgagcgccttgagggcagagcc 72
>RF00763;mir-339;AAGV020651181.1/406-501 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 96
Score = 58.0 bits (29), Expect = 2e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcgacgacagagcc 72
|||||||||||||||||||||||| | | | ||||||||||||||| | |||||||
Sbjct: 16 tccctgtcctccaggagctcacgtgggtcaggctgtgagcgcctcgagggcagagcc 72
>RF00763;mir-339;ABRQ01145792.1/10010-9917 9813:Procavia capensis
(cape rock hyrax)
Length = 94
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 ccgtccctgtcctccaggagctcacgt 39
|||||||||||||||||||||||||||
Sbjct: 13 ccgtccctgtcctccaggagctcacgt 39
>RF00763;mir-339;AAEX02031617.1/15158-15063 9615:Canis lupus
familiaris (dog)
Length = 96
Score = 50.1 bits (25), Expect = 5e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcgacgacagagcc 72
|||||||||||||||||||||| ||| ||| | |||||| |||||| | |||||||
Sbjct: 16 tccctgtcctccaggagctcacttatatctggccgtgagctcctcgaggccagagcc 72
>RF00763;mir-339;AAFC03028593.1/22710-22804 9913:Bos taurus
(cattle)
Length = 95
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 gtccctgtcctccaggagctcac 37
|||||||||||||||||||||||
Sbjct: 15 gtccctgtcctccaggagctcac 37
>RF00763;mir-339;ABRN01323414.1/629-534 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 96
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 gtccctgtcctccaggagctcac 37
|||||||||||||||||||||||
Sbjct: 15 gtccctgtcctccaggagctcac 37
>RF00763;mir-339;AAWR02040473.1/4828-4923 9796:Equus caballus
(horse)
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctcac 37
||||||||||||||||||||||
Sbjct: 16 tccctgtcctccaggagctcac 37
>RF00763;mir-339;AANN01504157.1/248-341 9365:Erinaceus europaeus
(western European hedgehog)
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctcac 37
||||||||||||||||||||||
Sbjct: 16 tccctgtcctccaggagctcac 37
>RF00763;mir-339;AAPE01244882.1/515-420 59463:Myotis lucifugus
(little brown bat)
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 tccctgtcctccaggagctcac 37
||||||||||||||||||||||
Sbjct: 16 tccctgtcctccaggagctcac 37
