miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00760;mir-342;ABRO01161250.1/591-689 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 99
Score = 178 bits (90), Expect = 9e-45
Identities = 93/94 (98%)
Strand = Plus / Plus
Query: 6 tgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattgtctca 65
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6 tgggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattgtctca 65
Query: 66 cacagaaatcgcacccgtcaccttggcctgctga 99
||||||||||||||||||||||||||||||||||
Sbjct: 66 cacagaaatcgcacccgtcaccttggcctgctga 99
>RF00760;mir-342;AAKN02052316.1/108279-108377 10141:Cavia
porcellus (domestic guinea pig)
Length = 99
Score = 149 bits (75), Expect = 8e-36
Identities = 87/91 (95%)
Strand = Plus / Plus
Query: 6 tgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattgtctca 65
||||| ||||||||||||||||||||||| | |||||||||| |||||||||||||||||
Sbjct: 6 tgggcccaaggtgaggggtgctatctgtgctggagggacatgatcaatggaattgtctca 65
Query: 66 cacagaaatcgcacccgtcaccttggcctgc 96
|||||||||||||||||||||||||||||||
Sbjct: 66 cacagaaatcgcacccgtcaccttggcctgc 96
>RF00760;mir-342;ABRQ01082244.1/3048-3146 9813:Procavia capensis
(cape rock hyrax)
Length = 99
Score = 147 bits (74), Expect = 3e-35
Identities = 86/90 (95%)
Strand = Plus / Plus
Query: 7 gggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattgtctcac 66
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 7 gggctcaaggtgaggggtgctatctgtgattgagggacatggtacatagaattgtctcac 66
Query: 67 acagaaatcgcacccgtcaccttggcctgc 96
|||||||||||||||||| |||||||||||
Sbjct: 67 acagaaatcgcacccgtctccttggcctgc 96
>RF00760;mir-342;AALT01532195.1/130-32 42254:Sorex araneus
(European shrew)
Length = 99
Score = 139 bits (70), Expect = 8e-33
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 6 tgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattgtctca 65
||||||||||||||||||||| |||||||| |||||||||||| ||| ||||||||||||
Sbjct: 6 tgggctcaaggtgaggggtgccatctgtgactgagggacatggccaaaggaattgtctca 65
Query: 66 cacagaaatcgcacccgtcaccttgg 91
||||||||||||||||||||||||||
Sbjct: 66 cacagaaatcgcacccgtcaccttgg 91
>RF00760;mir-342;AANG01132780.1/2716-2814 9685:Felis catus
(domestic cat)
Length = 99
Score = 137 bits (69), Expect = 3e-32
Identities = 87/93 (93%)
Strand = Plus / Plus
Query: 1 gaaaatgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattg 60
|||| ||||| | ||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 1 gaaactgggcgcgaggtgaggggtgctatctgtgattgagggacatggcaaatagaattg 60
Query: 61 tctcacacagaaatcgcacccgtcaccttggcc 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 tctcacacagaaatcgcacccgtcaccttggcc 93
>RF00760;mir-342;AAGW01329049.1/390-486 9986:Oryctolagus cuniculus
(rabbit)
Length = 97
Score = 95.6 bits (48), Expect = 1e-19
Identities = 70/76 (92%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 6 tgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattgtctca 65
||||||| |||||||||||||| |||||| |||||||||||| |||| |||||||||||
Sbjct: 6 tgggctcgaggtgaggggtgctctctgtgcgtgagggacatgg-caatcgaattgtctca 64
Query: 66 cacagaaatcgcaccc 81
||||||||||||||||
Sbjct: 65 cacagaaatcgcaccc 80
>RF00760;mir-342;AAYZ01348637.1/771-867 9978:Ochotona princeps
(American pika)
Length = 97
Score = 71.9 bits (36), Expect = 1e-12
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 18 gaggggtgctatctgtgattgagggacatggtcaatggaattgtctcacacagaaatcgc 77
|||||||||| |||||| |||||||||||| |||||||| ||||||||||||| |||||
Sbjct: 18 gaggggtgctctctgtgcctgagggacatgg-caatggaactgtctcacacagacatcgc 76
Query: 78 accc 81
||||
Sbjct: 77 accc 80
>RF00760;mir-342;AAFC03050755.1/31465-31562 9913:Bos taurus
(cattle)
Length = 98
Score = 63.9 bits (32), Expect = 4e-10
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 18 gaggggtgctatctgtgattgagggacatggtcaatggaattgtctcacacagaaatcgc 77
||||||||||||||||| |||||| ||| || |||| || |||||||||||||||||||
Sbjct: 18 gaggggtgctatctgtggttgagg-acacggcaaatgaaactgtctcacacagaaatcgc 76
Query: 78 accc 81
||||
Sbjct: 77 accc 80
