miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00825;mir-344;AC107641.11/81665-81571 10090:Mus musculus (house
mouse)
Length = 95
Score = 174 bits (88), Expect = 1e-43
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 1 gcagccagggtttttaccagtcaggctcctggctagattccaggtaccaactggtacctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gcagccagggtttttaccagtcaggctcctggctagattccaggtaccaactggtacctg 62
Query: 61 atctagccaaagcctgactgtaagctgtaaaa 92
||||||||||||||||||||||||||| ||||
Sbjct: 63 atctagccaaagcctgactgtaagctgcaaaa 94
>RF00825;mir-344;CAAA01109888.1/35922-36016 10090:Mus musculus
(house mouse)
Length = 95
Score = 73.8 bits (37), Expect = 4e-13
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 7 agggtttttaccagtcaggctcctggctagattccaggtaccaactggtacctgatctag 66
||||||||| |||||||||| ||||||||| | ||| || || ||||||||||||||||
Sbjct: 9 agggtttttttcagtcaggctgctggctagagtacagctatcagctggtacctgatctag 68
Query: 67 ccaaagcctgactgtaa 83
||||||||||| ||||
Sbjct: 69 tcaaagcctgacagtaa 85
>RF00825;mir-344;AAHX01005740.1/19235-19327 10116:Rattus
norvegicus (Norway rat)
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 51 ctggtacctgatctagccaaagcctgact 79
|||||||||||||| ||||||||||||||
Sbjct: 51 ctggtacctgatctggccaaagcctgact 79
>RF00825;mir-344;AAHX01005733.1/83790-83699 10116:Rattus
norvegicus (Norway rat)
Length = 92
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 51 ctggtacctgatctagccaaagcctgact 79
|||||||||||||| ||||||||||||||
Sbjct: 50 ctggtacctgatctggccaaagcctgact 78
>RF00825;mir-344;AC091333.6/80056-80144 10090:Mus musculus (house
mouse)
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 tagccaaagcctgactgtaagctg 87
||||||||||||||||||||||||
Sbjct: 60 tagccaaagcctgactgtaagctg 83
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 gcagccagggtttttaccagtcaggctcctggcta 35
||||||||| |||| | ||||||||||||||||||
Sbjct: 3 gcagccaggattttcatcagtcaggctcctggcta 37
