miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00825;mir-344;AAHX01005727.1/132954-132860 10116:Rattus
norvegicus (Norway rat)
Length = 95
Score = 157 bits (79), Expect = 3e-38
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 1 agagacctgatcagtcaggctgctggttatattccaggacttctctggtcctggatataa 60
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 9 agagatctgatcagtcaggctgctggttatattccaggacttctctggtcctgggtataa 68
Query: 61 ccaaagcccgactgttaaataaaagta 87
|||||||||||||||||||||||||||
Sbjct: 69 ccaaagcccgactgttaaataaaagta 95
>RF00825;mir-344;AAHY01371543.1/231-137 10090:Mus musculus (house
mouse)
Length = 95
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 8 tgatcagtcaggctgctggttatattccaggacttctctggtcctggatataaccaaagc 67
|||||||||||||| |||| ||||||||||||| | |||||||||| ||||||||||||
Sbjct: 16 tgatcagtcaggcttctggctatattccaggacatacctggtcctgggtataaccaaagc 75
Query: 68 ccgactgt 75
||||||||
Sbjct: 76 ccgactgt 83
>RF00825;mir-344;AAHY01152159.1/1178-1272 10090:Mus musculus
(house mouse)
Length = 95
Score = 83.8 bits (42), Expect = 4e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 tgatcagtcaggctgctggttatattccaggacttctctggtcctggatataaccaaagc 67
|||||||||||||| |||| ||||||||||||||| ||||| |||||||||||||||||
Sbjct: 16 tgatcagtcaggcttctggctatattccaggacttacctggttctggatataaccaaagc 75
Query: 68 ccgact 73
| ||||
Sbjct: 76 ctgact 81
>RF00825;mir-344;AABR04128032.1/4802-4897 10116:Rattus norvegicus
(Norway rat)
Length = 96
Score = 81.8 bits (41), Expect = 2e-15
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 7 ctgatcagtcaggctgctgg-ttatattccaggacttctctggtcctggatataaccaaa 65
||||||||||||||| |||| |||||||||||||||| || ||||||| ||||||||||
Sbjct: 15 ctgatcagtcaggctactgggttatattccaggacttgtccagtcctgggtataaccaaa 74
Query: 66 gcccgactg 74
|||||||||
Sbjct: 75 gcccgactg 83
>RF00825;mir-344;AC091333.6/136861-136955 10090:Mus musculus
(house mouse)
Length = 95
Score = 79.8 bits (40), Expect = 6e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 8 tgatcagtcaggctgctggttatattccaggacttctctggtcctggatataaccaaagc 67
|||||||||||||| |||| |||||| ||||||| ||||||||||| ||||| ||||||
Sbjct: 16 tgatcagtcaggcttctggctatatttcaggactcatctggtcctgggtataatcaaagc 75
Query: 68 ccgactgt 75
||||||||
Sbjct: 76 ccgactgt 83
>RF00825;mir-344;AAHX01446007.1/854-775 10116:Rattus norvegicus
(Norway rat)
Length = 80
Score = 77.8 bits (39), Expect = 2e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 16 caggctgctggttatattccaggacttctctggtcctggatataaccaaagcccgactg 74
|||||| |||| ||||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct: 10 caggctactggctatattccaggacctatctggtcctggatatagccaaagcccgactg 68
>RF00825;mir-344;AC138549.3/144160-144254 10090:Mus musculus
(house mouse)
Length = 95
Score = 75.8 bits (38), Expect = 9e-14
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 10 atcagtcaggctgctggttatattccaggacttctctggtcctggatataacca 63
|||||||||||| |||||||| |||||||||| ||||||||||||||||||||
Sbjct: 18 atcagtcaggctagtggttatactccaggacttatctggtcctggatataacca 71
>RF00825;mir-344;AABR04128032.1/995-1089 10116:Rattus norvegicus
(Norway rat)
Length = 95
Score = 71.9 bits (36), Expect = 1e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 8 tgatcagtcaggctgctggttatattccaggacttctctggtcctggatataaccaaagc 67
|||||||| ||||| |||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct: 16 tgatcagtaaggctactggctatattccaggactcatctggtcctgggtataaccaaagc 75
>RF00825;mir-344;AABR04007982.1/6993-7087 10116:Rattus norvegicus
(Norway rat)
Length = 95
Score = 71.9 bits (36), Expect = 1e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 8 tgatcagtcaggctgctggttatattccaggacttctctggtcctggatataaccaaagc 67
||||||||||||||||||| ||| ||||| ||||| ||| || |||||||||||||||||
Sbjct: 16 tgatcagtcaggctgctggctattttccatgacttatctagttctggatataaccaaagc 75
>RF00825;mir-344;AAHY01149168.1/2858-2952 10090:Mus musculus
(house mouse)
Length = 95
Score = 71.9 bits (36), Expect = 1e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 8 tgatcagtcaggctgctggttatattccaggacttctctggtcctggatataacca 63
||||||||||||||||||| |||| ||| ||| || ||||||||||||||||||||
Sbjct: 16 tgatcagtcaggctgctggctatactccgggaattttctggtcctggatataacca 71
>RF00825;mir-344;CAAA01046640.1/10756-10850 10090:Mus musculus
(house mouse)
Length = 95
Score = 69.9 bits (35), Expect = 6e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 10 atcagtcaggctgctggttatattccaggacttctctggtcctggatataaccaaagcc 68
|||||||| ||| |||| |||||| |||||||| ||||||||||| |||||||||||||
Sbjct: 18 atcagtcaagcttctggctatatttcaggacttatctggtcctgggtataaccaaagcc 76
>RF00825;mir-344;AC091333.6/185368-185462 10090:Mus musculus
(house mouse)
Length = 95
Score = 69.9 bits (35), Expect = 6e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 21 tgctggttatattccaggacttctctggtcctggatataacca 63
|||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 29 tgctggctatattccaggacttatctggtcctggatataacca 71
>RF00825;mir-344;AC138549.3/195108-195202 10090:Mus musculus
(house mouse)
Length = 95
Score = 69.9 bits (35), Expect = 6e-12
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 16 caggctgctggttatattccaggacttctctggtcctggatataaccaaag 66
||||||||||| |||||||||| ||| |||||||||||||||||||||||
Sbjct: 24 caggctgctggctatattccagaactcatctggtcctggatataaccaaag 74
>RF00825;mir-344;AC138549.3/196655-196749 10090:Mus musculus
(house mouse)
Length = 95
Score = 63.9 bits (32), Expect = 4e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 8 tgatcagtcaggctgctggttatattccaggacttctctggtcctggatataaccaaagc 67
||||||||| || |||||| |||||| ||||| || ||||||||||| ||||||||||||
Sbjct: 16 tgatcagtcgggttgctggctatattacaggatttatctggtcctggctataaccaaagc 75
>RF00825;mir-344;CAAA01194466.1/23523-23615 10090:Mus musculus
(house mouse)
Length = 93
Score = 63.9 bits (32), Expect = 4e-10
Identities = 61/68 (89%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 8 tgatcagtcaggctgctggttatattccaggacttctctggtcctggatataaccaaagc 67
||||||||||||||||||| ||||||||||||| ||||||||| |||||| || ||||
Sbjct: 16 tgatcagtcaggctgctggctatattccaggacaagtctggtcct-gatatagcc-aagc 73
Query: 68 ccgactgt 75
||||||||
Sbjct: 74 ccgactgt 81
>RF00825;mir-344;AC138549.3/121511-121605 10090:Mus musculus
(house mouse)
Length = 95
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 8 tgatcagtcaggctgctggttatattccaggacttctctggtcctggatataaccaaagc 67
|||||||| ||||| ||| |||||||||||| || |||||| |||| ||||||||||||
Sbjct: 16 tgatcagttaggcttgtggctatattccaggaattatctggttctgggtataaccaaagc 75
Query: 68 ccgactg 74
| |||||
Sbjct: 76 cagactg 82
>RF00825;mir-344;AABR04007982.1/14960-15054 10116:Rattus
norvegicus (Norway rat)
Length = 95
Score = 60.0 bits (30), Expect = 6e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 8 tgatcagtcaggctgctggttatattccaggacttctctggtcctggatataaccaaa 65
|||||| |||||||||||| ||||||||||||||| ||| ||| || ||||||||||
Sbjct: 16 tgatcaatcaggctgctggctatattccaggacttaactgatcccgggtataaccaaa 73
>RF00825;mir-344;AAHY01148530.1/4369-4463 10090:Mus musculus
(house mouse)
Length = 95
Score = 60.0 bits (30), Expect = 6e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 tgatcagtcaggctgctggttatattccaggacttctctggtcctggatataaccaaagc 67
|||||||||||||| |||| |||||||| |||||| |||||||||| || ||||| ||
Sbjct: 16 tgatcagtcaggcttctggctatattcccggacttacctggtcctgggtaaaaccataga 75
Query: 68 ccgact 73
||||||
Sbjct: 76 ccgact 81
>RF00825;mir-344;AABR04007982.1/23044-23137 10116:Rattus
norvegicus (Norway rat)
Length = 94
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 10 atcagtcaggctgctggttatattccaggacttctctggtcctggatataaccaaagccc 69
|||| ||||||| | |||||||||||| ||||| ||||| |||||| ||||||||| ||
Sbjct: 17 atcaatcaggctacaggttatattccaagacttgtctggccctggaaataaccaaaccct 76
Query: 70 gactg 74
|||||
Sbjct: 77 gactg 81
>RF00825;mir-344;AAHY01062138.1/2745-2651 10090:Mus musculus
(house mouse)
Length = 95
Score = 58.0 bits (29), Expect = 2e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 8 tgatcagtcaggctgctggttatattccaggacttctctggtcct 52
||||||||| |||| |||| ||||||||||||||| |||||||||
Sbjct: 16 tgatcagtctggcttctggctatattccaggacttatctggtcct 60
>RF00825;mir-344;AABR04007982.1/49657-49751 10116:Rattus
norvegicus (Norway rat)
Length = 95
Score = 56.0 bits (28), Expect = 9e-08
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 14 gtcaggctgctggttatattccaggacttctctggtcctggatataaccaaa 65
|||||||| |||||||||||||||||||| || || |||| ||||||||||
Sbjct: 22 gtcaggctactggttatattccaggacttgtccagttctgggtataaccaaa 73
>RF00825;mir-344;AABR04007982.1/33684-33780 10116:Rattus
norvegicus (Norway rat)
Length = 97
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 3 agacctgatcagtcaggctgctggttatattccaggact 41
||||||||| | ||||||| |||||||||||||||||||
Sbjct: 11 agacctgattactcaggctactggttatattccaggact 49
>RF00825;mir-344;AABR04052925.1/6896-6990 10116:Rattus norvegicus
(Norway rat)
Length = 95
Score = 52.0 bits (26), Expect = 1e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 7 ctgatcagtcaggctgctggttatattccaggacttctctggtcctggatataaccaaag 66
||||| ||||||||| |||||||||||||||| ||| || || ||| |||||||||||
Sbjct: 15 ctgatgagtcaggctactggttatattccagggcttatccagttctgagtataaccaaag 74
Query: 67 cc 68
||
Sbjct: 75 cc 76
>RF00825;mir-344;AAHX01005728.1/12063-11970 10116:Rattus
norvegicus (Norway rat)
Length = 94
Score = 50.1 bits (25), Expect = 5e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 13 agtcaggctgctggttatattccaggacttctctggtcctggatataaccaaa 65
||||| ||| |||||||||||||||||||| || || |||| ||||||||||
Sbjct: 21 agtcatgctactggttatattccaggacttgtccagttctgggtataaccaaa 73
>RF00825;mir-344;AAHY01062139.1/23440-23346 10090:Mus musculus
(house mouse)
Length = 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 23 ctggttatattccaggacttctctggtcctggatataaccaaagcccgactgt 75
|||| ||| ||||||||||| |||| ||||| ||||||||||||| ||||||
Sbjct: 31 ctggctattttccaggacttagctggacctgggtataaccaaagcctgactgt 83
>RF00825;mir-344;AABR04064218.1/5838-5745 10116:Rattus norvegicus
(Norway rat)
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 55/64 (85%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 11 tcagtcaggctgctggttatattccaggacttctctggtcctggatataaccaaagcccg 70
||||||||||| |||| | || || |||||||||||| |||||| |||| |||||||| |
Sbjct: 19 tcagtcaggctcctggct-taatctaggacttctctgttcctgggtatacccaaagcctg 77
Query: 71 actg 74
||||
Sbjct: 78 actg 81
>RF00825;mir-344;AABR04007982.1/30556-30649 10116:Rattus
norvegicus (Norway rat)
Length = 94
Score = 46.1 bits (23), Expect = 8e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 33 tccaggacttctctggtcctggatataaccaaagcccgactgt 75
|||||||||| ||||||||||| | || ||||||||| |||||
Sbjct: 40 tccaggacttatctggtcctgggtgtacccaaagcccaactgt 82
>RF00825;mir-344;AABR04117568.1/510-416 10116:Rattus norvegicus
(Norway rat)
Length = 95
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 tcaggctgctggttatattccaggact 41
||||||| |||||||||||||||||||
Sbjct: 23 tcaggctactggttatattccaggact 49
>RF00825;mir-344;AABR04007982.1/24208-24302 10116:Rattus
norvegicus (Norway rat)
Length = 95
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 8 tgatcagtcaggctgctggttatattccaggactt 42
|||||||||||||| ||| |||||||||||||||
Sbjct: 16 tgatcagtcaggctattggctatattccaggactt 50
>RF00825;mir-344;CAAA01046640.1/49863-49957 10090:Mus musculus
(house mouse)
Length = 95
Score = 46.1 bits (23), Expect = 8e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 28 tatattccaggacttctctggtcctggatataaccaaag 66
|||||||||| |||| |||| |||||| |||||||||||
Sbjct: 36 tatattccagaacttatctgatcctgggtataaccaaag 74
