miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00825;mir-344;AAHX01005727.1/132954-132860 10116:Rattus
norvegicus (Norway rat)
Length = 95
Score = 141 bits (71), Expect = 1e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgatcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 tgatcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagc 75
Query: 61 ccgactgttaa 71
|||||||||||
Sbjct: 76 ccgactgttaa 86
>RF00825;mir-344;AAHY01371543.1/231-137 10090:Mus musculus (house
mouse)
Length = 95
Score = 95.6 bits (48), Expect = 7e-20
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 1 tgatcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagc 60
|||||||||||||| |||| ||||||||||||| | |||||||||||||||||||||||
Sbjct: 16 tgatcagtcaggcttctggctatattccaggacatacctggtcctgggtataaccaaagc 75
Query: 61 ccgactgt 68
||||||||
Sbjct: 76 ccgactgt 83
>RF00825;mir-344;AABR04128032.1/4802-4897 10116:Rattus norvegicus
(Norway rat)
Length = 96
Score = 87.7 bits (44), Expect = 2e-17
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 1 tgatcagtcaggctgctgg-ttatattccaggacttctctggtcctgggtataaccaaag 59
|||||||||||||| |||| |||||||||||||||| || |||||||||||||||||||
Sbjct: 16 tgatcagtcaggctactgggttatattccaggacttgtccagtcctgggtataaccaaag 75
Query: 60 cccgactg 67
||||||||
Sbjct: 76 cccgactg 83
>RF00825;mir-344;AC091333.6/136861-136955 10090:Mus musculus
(house mouse)
Length = 95
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 1 tgatcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagc 60
|||||||||||||| |||| |||||| ||||||| ||||||||||||||||| ||||||
Sbjct: 16 tgatcagtcaggcttctggctatatttcaggactcatctggtcctgggtataatcaaagc 75
Query: 61 ccgactgt 68
||||||||
Sbjct: 76 ccgactgt 83
>RF00825;mir-344;AABR04128032.1/995-1089 10116:Rattus norvegicus
(Norway rat)
Length = 95
Score = 79.8 bits (40), Expect = 4e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 1 tgatcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagc 60
|||||||| ||||| |||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 16 tgatcagtaaggctactggctatattccaggactcatctggtcctgggtataaccaaagc 75
>RF00825;mir-344;CAAA01046640.1/10756-10850 10090:Mus musculus
(house mouse)
Length = 95
Score = 77.8 bits (39), Expect = 2e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 3 atcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagcc 61
|||||||| ||| |||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct: 18 atcagtcaagcttctggctatatttcaggacttatctggtcctgggtataaccaaagcc 76
>RF00825;mir-344;AAHY01152159.1/1178-1272 10090:Mus musculus
(house mouse)
Length = 95
Score = 75.8 bits (38), Expect = 6e-14
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 1 tgatcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagc 60
|||||||||||||| |||| ||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 16 tgatcagtcaggcttctggctatattccaggacttacctggttctggatataaccaaagc 75
Query: 61 ccgact 66
| ||||
Sbjct: 76 ctgact 81
>RF00825;mir-344;AAHX01446007.1/854-775 10116:Rattus norvegicus
(Norway rat)
Length = 80
Score = 69.9 bits (35), Expect = 4e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 9 caggctgctggttatattccaggacttctctggtcctgggtataaccaaagcccgactg 67
|||||| |||| ||||||||||||| | ||||||||||| |||| ||||||||||||||
Sbjct: 10 caggctactggctatattccaggacctatctggtcctggatatagccaaagcccgactg 68
>RF00825;mir-344;AC138549.3/121511-121605 10090:Mus musculus
(house mouse)
Length = 95
Score = 69.9 bits (35), Expect = 4e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 1 tgatcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagc 60
|||||||| ||||| ||| |||||||||||| || |||||| |||||||||||||||||
Sbjct: 16 tgatcagttaggcttgtggctatattccaggaattatctggttctgggtataaccaaagc 75
Query: 61 ccgactg 67
| |||||
Sbjct: 76 cagactg 82
>RF00825;mir-344;AABR04007982.1/14960-15054 10116:Rattus
norvegicus (Norway rat)
Length = 95
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 1 tgatcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaa 58
|||||| |||||||||||| ||||||||||||||| ||| ||| |||||||||||||
Sbjct: 16 tgatcaatcaggctgctggctatattccaggacttaactgatcccgggtataaccaaa 73
>RF00825;mir-344;AAHY01148530.1/4369-4463 10090:Mus musculus
(house mouse)
Length = 95
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 1 tgatcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagc 60
|||||||||||||| |||| |||||||| |||||| ||||||||||||| ||||| ||
Sbjct: 16 tgatcagtcaggcttctggctatattcccggacttacctggtcctgggtaaaaccataga 75
Query: 61 ccgact 66
||||||
Sbjct: 76 ccgact 81
>RF00825;mir-344;AC138549.3/144160-144254 10090:Mus musculus
(house mouse)
Length = 95
Score = 67.9 bits (34), Expect = 2e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 3 atcagtcaggctgctggttatattccaggacttctctggtcctgggtataacca 56
|||||||||||| |||||||| |||||||||| ||||||||||| ||||||||
Sbjct: 18 atcagtcaggctagtggttatactccaggacttatctggtcctggatataacca 71
>RF00825;mir-344;AAHY01062138.1/2745-2651 10090:Mus musculus
(house mouse)
Length = 95
Score = 65.9 bits (33), Expect = 6e-11
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 1 tgatcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagc 60
||||||||| |||| |||| ||||||||||||||| ||||||||| || ||||||||||
Sbjct: 16 tgatcagtctggcttctggctatattccaggacttatctggtcctctgtttaaccaaagc 75
Query: 61 c 61
|
Sbjct: 76 c 76
>RF00825;mir-344;AABR04007982.1/49657-49751 10116:Rattus
norvegicus (Norway rat)
Length = 95
Score = 63.9 bits (32), Expect = 2e-10
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 7 gtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaa 58
|||||||| |||||||||||||||||||| || || |||||||||||||||
Sbjct: 22 gtcaggctactggttatattccaggacttgtccagttctgggtataaccaaa 73
>RF00825;mir-344;AABR04007982.1/6993-7087 10116:Rattus norvegicus
(Norway rat)
Length = 95
Score = 63.9 bits (32), Expect = 2e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 1 tgatcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagc 60
||||||||||||||||||| ||| ||||| ||||| ||| || |||| ||||||||||||
Sbjct: 16 tgatcagtcaggctgctggctattttccatgacttatctagttctggatataaccaaagc 75
>RF00825;mir-344;AC138549.3/196655-196749 10090:Mus musculus
(house mouse)
Length = 95
Score = 63.9 bits (32), Expect = 2e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 1 tgatcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagc 60
||||||||| || |||||| |||||| ||||| || ||||||||||| ||||||||||||
Sbjct: 16 tgatcagtcgggttgctggctatattacaggatttatctggtcctggctataaccaaagc 75
>RF00825;mir-344;AAHY01149168.1/2858-2952 10090:Mus musculus
(house mouse)
Length = 95
Score = 63.9 bits (32), Expect = 2e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 1 tgatcagtcaggctgctggttatattccaggacttctctggtcctgggtataacca 56
||||||||||||||||||| |||| ||| ||| || ||||||||||| ||||||||
Sbjct: 16 tgatcagtcaggctgctggctatactccgggaattttctggtcctggatataacca 71
>RF00825;mir-344;AC091333.6/185368-185462 10090:Mus musculus
(house mouse)
Length = 95
Score = 61.9 bits (31), Expect = 9e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 14 tgctggttatattccaggacttctctggtcctgggtataacca 56
|||||| ||||||||||||||| ||||||||||| ||||||||
Sbjct: 29 tgctggctatattccaggacttatctggtcctggatataacca 71
>RF00825;mir-344;AC138549.3/195108-195202 10090:Mus musculus
(house mouse)
Length = 95
Score = 61.9 bits (31), Expect = 9e-10
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 9 caggctgctggttatattccaggacttctctggtcctgggtataaccaaag 59
||||||||||| |||||||||| ||| ||||||||||| |||||||||||
Sbjct: 24 caggctgctggctatattccagaactcatctggtcctggatataaccaaag 74
>RF00825;mir-344;CAAA01194466.1/23523-23615 10090:Mus musculus
(house mouse)
Length = 93
Score = 60.0 bits (30), Expect = 4e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 1 tgatcagtcaggctgctggttatattccaggacttctctggtcctg 46
||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 16 tgatcagtcaggctgctggctatattccaggacaagtctggtcctg 61
>RF00825;mir-344;AAHX01005728.1/12063-11970 10116:Rattus
norvegicus (Norway rat)
Length = 94
Score = 58.0 bits (29), Expect = 1e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 6 agtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaa 58
||||| ||| |||||||||||||||||||| || || |||||||||||||||
Sbjct: 21 agtcatgctactggttatattccaggacttgtccagttctgggtataaccaaa 73
>RF00825;mir-344;AABR04052925.1/6896-6990 10116:Rattus norvegicus
(Norway rat)
Length = 95
Score = 58.0 bits (29), Expect = 1e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 1 tgatcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagc 60
|||| ||||||||| |||||||||||||||| ||| || || ||| |||||||||||||
Sbjct: 16 tgatgagtcaggctactggttatattccagggcttatccagttctgagtataaccaaagc 75
Query: 61 c 61
|
Sbjct: 76 c 76
>RF00825;mir-344;AAHY01062139.1/23440-23346 10090:Mus musculus
(house mouse)
Length = 95
Score = 58.0 bits (29), Expect = 1e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 16 ctggttatattccaggacttctctggtcctgggtataaccaaagcccgactgt 68
|||| ||| ||||||||||| |||| ||||||||||||||||||| ||||||
Sbjct: 31 ctggctattttccaggacttagctggacctgggtataaccaaagcctgactgt 83
>RF00825;mir-344;AABR04064218.1/5838-5745 10116:Rattus norvegicus
(Norway rat)
Length = 94
Score = 56.0 bits (28), Expect = 6e-08
Identities = 56/64 (87%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 4 tcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagcccg 63
||||||||||| |||| | || || |||||||||||| ||||||||||| |||||||| |
Sbjct: 19 tcagtcaggctcctggct-taatctaggacttctctgttcctgggtatacccaaagcctg 77
Query: 64 actg 67
||||
Sbjct: 78 actg 81
>RF00825;mir-344;AABR04007982.1/30556-30649 10116:Rattus
norvegicus (Norway rat)
Length = 94
Score = 54.0 bits (27), Expect = 2e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 26 tccaggacttctctggtcctgggtataaccaaagcccgactgt 68
|||||||||| ||||||||||||| || ||||||||| |||||
Sbjct: 40 tccaggacttatctggtcctgggtgtacccaaagcccaactgt 82
>RF00825;mir-344;CAAA01046640.1/49863-49957 10090:Mus musculus
(house mouse)
Length = 95
Score = 54.0 bits (27), Expect = 2e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 21 tatattccaggacttctctggtcctgggtataaccaaag 59
|||||||||| |||| |||| ||||||||||||||||||
Sbjct: 36 tatattccagaacttatctgatcctgggtataaccaaag 74
>RF00825;mir-344;AABR04117568.1/510-416 10116:Rattus norvegicus
(Norway rat)
Length = 95
Score = 52.0 bits (26), Expect = 9e-07
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 8 tcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagcc 61
||||||| ||||||||||||||||||| | |||||| ||||||||||||||
Sbjct: 23 tcaggctactggttatattccaggactcatgccgtcctgagtataaccaaagcc 76
>RF00825;mir-344;AABR04007982.1/23044-23137 10116:Rattus
norvegicus (Norway rat)
Length = 94
Score = 50.1 bits (25), Expect = 4e-06
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 3 atcagtcaggctgctggttatattccaggacttctctggtcctgggtataaccaaagccc 62
|||| ||||||| | |||||||||||| ||||| ||||| ||||| ||||||||| ||
Sbjct: 17 atcaatcaggctacaggttatattccaagacttgtctggccctggaaataaccaaaccct 76
Query: 63 gactg 67
|||||
Sbjct: 77 gactg 81
>RF00825;mir-344;AABR04007982.1/24208-24302 10116:Rattus
norvegicus (Norway rat)
Length = 95
Score = 48.1 bits (24), Expect = 1e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 1 tgatcagtcaggctgctggttatattccaggacttctctggtcctgggtata 52
|||||||||||||| ||| ||||||||||||||| | || ||||| |||||
Sbjct: 16 tgatcagtcaggctattggctatattccaggacttatgtgatcctgagtata 67
>RF00825;mir-344;CAAA01046640.1/38474-38564 10090:Mus musculus
(house mouse)
Length = 91
Score = 48.1 bits (24), Expect = 1e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 13 ctgctggttatattccaggacttctctggtcctgggtataaccaaagc 60
||||||| ||||||| ||||| | | |||||||||||||||||||||
Sbjct: 24 ctgctggctatattctaggacgtatgaggtcctgggtataaccaaagc 71
>RF00825;mir-344;AABR04007982.1/33684-33780 10116:Rattus
norvegicus (Norway rat)
Length = 97
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 tcaggctgctggttatattccaggact 34
||||||| |||||||||||||||||||
Sbjct: 23 tcaggctactggttatattccaggact 49
>RF00825;mir-344;AABR04007982.1/32109-32205 10116:Rattus
norvegicus (Norway rat)
Length = 97
Score = 44.1 bits (22), Expect = 2e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 17 tggttatattccaggacttctctggtcctgggtataaccaaagcccgact 66
|||||||||||||||| || || || || ||||||||||||| ||||||
Sbjct: 34 tggttatattccaggaattgtccagttctaggtataaccaaagtccgact 83
