miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01903;mir-500;ABRQ01341134.1/4896-4985 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 91.7 bits (46), Expect = 9e-19
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 5 aatccttggaacctaggtgtgaatgctgcttcagtgcaacacacctgttcaaggattc 62
|||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct: 19 aatccttggaacctaggtgtgagtgctacttcagtgcaacacacctgttgaaggattc 76
>RF01903;mir-500;AAGW01126437.1/6267-6356 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 89.7 bits (45), Expect = 4e-18
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 5 aatccttggaacctaggtgtgaatgctgcttcagtgcaacacacctgttcaaggattcaa 64
||||||||| |||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct: 19 aatccttggcacctaggtgtgagtgctgtttcagtgcaacacacctattcaaggattcaa 78
Query: 65 a 65
|
Sbjct: 79 a 79
>RF01903;mir-500;ABRR01444762.1/1337-1426 30538:Lama pacos
(alpaca)
Length = 90
Score = 67.9 bits (34), Expect = 1e-11
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 1 ctcgaatccttggaacctaggtgtgaatgctgcttcag-tgcaacacacctgttcaagga 59
|||||||||||||||||||||||||| ||| | ||| | |||||||||||| ||||||||
Sbjct: 15 ctcgaatccttggaacctaggtgtgagtgccg-ttctgatgcaacacacctattcaagga 73
Query: 60 ttcaaa 65
||||||
Sbjct: 74 ttcaaa 79
>RF01903;mir-500;AANN01738471.1/11-100 9365:Erinaceus europaeus
(western European hedgehog)
Length = 90
Score = 54.0 bits (27), Expect = 2e-07
Identities = 56/63 (88%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 1 ctcgaatccttggaacctaggtgtgaatgctgcttcagtgcaacaca-cctgttcaagga 59
|||||||||| ||||||||||||||| |||| | |||||||||||| ||| ||||||||
Sbjct: 15 ctcgaatcct-ggaacctaggtgtgagtgctattccagtgcaacacaccctattcaagga 73
Query: 60 ttc 62
|||
Sbjct: 74 ttc 76
