miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33092_rno-mir-3592:mirbase
Length = 116
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 1 ggtacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 ggtacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacgg 40
Query: 61 acaacacttttttcagtacc 80
||||||||||||||||||||
Sbjct: 39 acaacacttttttcagtacc 20
>32055_mmu-mir-382:mirbase
Length = 76
Score = 151 bits (76), Expect = 9e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 3 tacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacggac 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacggac 60
Query: 63 aacacttttttcagta 78
||||||||||||||||
Sbjct: 61 aacacttttttcagta 76
>33788_bta-mir-3578:mirbase
Length = 86
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Minus
Query: 1 ggtacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacgg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 83 ggtacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacgg 24
Query: 61 acaacacttttttcagtacc 80
||||||||||||||||||||
Sbjct: 23 acaacacttttttcagtacc 4
>33834_oar-mir-382:mirbase
Length = 126
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacgg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 31 ggtacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacgg 90
Query: 61 acaacacttttttcagtacc 80
||||||||||||||||||||
Sbjct: 91 acaacacttttttcagtacc 110
>33835_oar-mir-382:mirbase
Length = 126
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacgg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 31 ggtacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacgg 90
Query: 61 acaacacttttttcagtacc 80
||||||||||||||||||||
Sbjct: 91 acaacacttttttcagtacc 110
>34085_ssc-mir-382:mirbase
Length = 77
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 4 acttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacggaca 63
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 acttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacggaca 60
Query: 64 acacttttttcagtacc 80
|||||||||||||||||
Sbjct: 61 acacttttttcagtacc 77
>27164_eca-mir-382:mirbase
Length = 76
Score = 143 bits (72), Expect = 2e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 3 tacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacggac 62
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacggac 60
Query: 63 aacacttttttcagta 78
||||||||||||||||
Sbjct: 61 aacacttttttcagta 76
>27888_mml-mir-382:mirbase
Length = 76
Score = 143 bits (72), Expect = 2e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 3 tacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacggac 62
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacggac 60
Query: 63 aacacttttttcagta 78
||||||||||||||||
Sbjct: 61 aacacttttttcagta 76
>28635_hsa-mir-382:mirbase
Length = 76
Score = 143 bits (72), Expect = 2e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 3 tacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacggac 62
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacggac 60
Query: 63 aacacttttttcagta 78
||||||||||||||||
Sbjct: 61 aacacttttttcagta 76
>33359_bta-mir-382:mirbase
Length = 76
Score = 143 bits (72), Expect = 2e-35
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 3 tacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacggac 62
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tacttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacggac 60
Query: 63 aacacttttttcagta 78
||||||||||||||||
Sbjct: 61 aacacttttttcagta 76
>30362_ptr-mir-382:mirbase
Length = 75
Score = 141 bits (71), Expect = 8e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 4 acttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacggaca 63
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 acttgaagagaagttgttcgtggtggattcgctttacttatgacgaatcattcacggaca 60
Query: 64 acacttttttcagta 78
|||||||||||||||
Sbjct: 61 acacttttttcagta 75
>30989_ppy-mir-382:mirbase
Length = 76
Score = 135 bits (68), Expect = 5e-33
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 3 tacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacggac 62
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 1 tacttgaagagaagttgttcgtggtggattccctttacttatgacgaatcattcacggac 60
Query: 63 aacacttttttcagta 78
||||||||||||||||
Sbjct: 61 aacacttttttcagta 76
>26833_cfa-mir-382:mirbase
Length = 57
Score = 105 bits (53), Expect = 5e-24
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 14 aagttgttcgtggtggattcgctttacttgtgacgaatcattcacggacaacacttt 70
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 aagttgttcgtggtggattcgctttacttatgacgaatcattcacggacaacacttt 57
>33242_bta-mir-154:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 31 ttcgctttacttgtgacgaatcattcacgg 60
|||||||||||||||||||||||| |||||
Sbjct: 33 ttcgctttacttgtgacgaatcatacacgg 62
>33799_oar-mir-154a:mirbase
Length = 105
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 31 ttcgctttacttgtgacgaatcattcacgg 60
|||||||||||||||||||||||| |||||
Sbjct: 42 ttcgctttacttgtgacgaatcatacacgg 71
>33800_oar-mir-154a:mirbase
Length = 105
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 31 ttcgctttacttgtgacgaatcattcacgg 60
|||||||||||||||||||||||| |||||
Sbjct: 42 ttcgctttacttgtgacgaatcatacacgg 71
>27765_mml-mir-154:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacgg 60
|||||||||||| | ||| | |||| || ||||||||| |||||||||||||| |||||
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
>28220_mne-mir-154:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacgg 60
|||||||||||| | ||| | |||| || ||||||||| |||||||||||||| |||||
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
>28312_ggo-mir-154:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacgg 60
|||||||||||| | ||| | |||| || ||||||||| |||||||||||||| |||||
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
>28481_hsa-mir-154:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacgg 60
|||||||||||| | ||| | |||| || ||||||||| |||||||||||||| |||||
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
>30101_ppa-mir-154:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacgg 60
|||||||||||| | ||| | |||| || ||||||||| |||||||||||||| |||||
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
>30249_ptr-mir-154:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacgg 60
|||||||||||| | ||| | |||| || ||||||||| |||||||||||||| |||||
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
>30863_ppy-mir-154:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 1 ggtacttgaagagaagttgttcgtggtggattcgctttacttgtgacgaatcattcacgg 60
|||||||||||| | ||| | |||| || ||||||||| |||||||||||||| |||||
Sbjct: 3 ggtacttgaagataggttatccgtgttgccttcgctttatttgtgacgaatcatacacgg 62
