miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>32061_mmu-mir-410:mirbase
          Length = 81

 Score =  151 bits (76), Expect = 8e-38
 Identities = 76/76 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  acttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5  acttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatg 64

                          
Query: 61 gcctgttttcaatacc 76
          ||||||||||||||||
Sbjct: 65 gcctgttttcaatacc 80




>33363_bta-mir-410:mirbase
          Length = 81

 Score =  143 bits (72), Expect = 2e-35
 Identities = 75/76 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  acttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5  acttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatg 64

                          
Query: 61 gcctgttttcaatacc 76
          ||||||||||| ||||
Sbjct: 65 gcctgttttcagtacc 80




>33838_oar-mir-410:mirbase
          Length = 126

 Score =  143 bits (72), Expect = 2e-35
 Identities = 75/76 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36  acttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatg 95

                           
Query: 61  gcctgttttcaatacc 76
           ||||||||||| ||||
Sbjct: 96  gcctgttttcagtacc 111




>33839_oar-mir-410:mirbase
          Length = 126

 Score =  143 bits (72), Expect = 2e-35
 Identities = 75/76 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36  acttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatg 95

                           
Query: 61  gcctgttttcaatacc 76
           ||||||||||| ||||
Sbjct: 96  gcctgttttcagtacc 111




>27169_eca-mir-410:mirbase
          Length = 74

 Score =  129 bits (65), Expect = 3e-31
 Identities = 71/73 (97%)
 Strand = Plus / Plus

                                                                      
Query: 4  tgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcc 63
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcc 60

                       
Query: 64 tgttttcaatacc 76
          ||| |||| ||||
Sbjct: 61 tgtcttcagtacc 73




>27893_mml-mir-410:mirbase
          Length = 80

 Score =  123 bits (62), Expect = 2e-29
 Identities = 72/74 (97%), Gaps = 1/74 (1%)
 Strand = Plus / Plus

                                                                      
Query: 4  tgaggagaggttgtctgtgatgagttcgcttt-attaatgacgaatataacacagatggc 62
          |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 7  tgaggagaggttgtctgtgatgagttcgcttttattaatgacgaatataacacagatggc 66

                        
Query: 63 ctgttttcaatacc 76
          ||||||||| ||||
Sbjct: 67 ctgttttcagtacc 80




>28640_hsa-mir-410:mirbase
          Length = 80

 Score =  115 bits (58), Expect = 4e-27
 Identities = 71/74 (95%), Gaps = 1/74 (1%)
 Strand = Plus / Plus

                                                                      
Query: 4  tgaggagaggttgtctgtgatgagttcgcttt-attaatgacgaatataacacagatggc 62
          |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 7  tgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacacagatggc 66

                        
Query: 63 ctgttttcaatacc 76
          ||||||||| ||||
Sbjct: 67 ctgttttcagtacc 80




>30365_ptr-mir-410:mirbase
          Length = 79

 Score =  115 bits (58), Expect = 4e-27
 Identities = 71/74 (95%), Gaps = 1/74 (1%)
 Strand = Plus / Plus

                                                                      
Query: 4  tgaggagaggttgtctgtgatgagttcgcttt-attaatgacgaatataacacagatggc 62
          |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 6  tgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacacagatggc 65

                        
Query: 63 ctgttttcaatacc 76
          ||||||||| ||||
Sbjct: 66 ctgttttcagtacc 79




>30994_ppy-mir-410:mirbase
          Length = 80

 Score =  115 bits (58), Expect = 4e-27
 Identities = 71/74 (95%), Gaps = 1/74 (1%)
 Strand = Plus / Plus

                                                                      
Query: 4  tgaggagaggttgtctgtgatgagttcgcttt-attaatgacgaatataacacagatggc 62
          |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 7  tgagaagaggttgtctgtgatgagttcgcttttattaatgacgaatataacacagatggc 66

                        
Query: 63 ctgttttcaatacc 76
          ||||||||| ||||
Sbjct: 67 ctgttttcagtacc 80




>26837_cfa-mir-410:mirbase
          Length = 56

 Score =  103 bits (52), Expect = 2e-23
 Identities = 55/56 (98%)
 Strand = Plus / Plus

                                                                  
Query: 11 aggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcctgt 66
          |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1  aggttgtctgtgatgagttcgctttattaatgccgaatataacacagatggcctgt 56