miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAQR01664935.1/16813-16890 30611:Otolemur
          garnettii (small-eared galago)
          Length = 78

 Score =  123 bits (62), Expect = 3e-28
 Identities = 65/66 (98%)
 Strand = Plus / Plus

                                                                      
Query: 3  ttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggc 62
          ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6  ttgagaagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggc 65

                
Query: 63 ctgttt 68
          ||||||
Sbjct: 66 ctgttt 71




>RF00641;mir-154;AAKN02051949.1/133347-133425 10141:Cavia
          porcellus (domestic guinea pig)
          Length = 79

 Score =  119 bits (60), Expect = 5e-27
 Identities = 63/64 (98%)
 Strand = Plus / Plus

                                                                      
Query: 8  gagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcctgtt 67
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 11 gagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcctgtc 70

              
Query: 68 ttca 71
          ||||
Sbjct: 71 ttca 74




>RF00641;mir-154;AAYZ01254085.1/11201-11278 9978:Ochotona princeps
          (American pika)
          Length = 78

 Score =  117 bits (59), Expect = 2e-26
 Identities = 65/67 (97%)
 Strand = Plus / Plus

                                                                      
Query: 4  tgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcc 63
          |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 6  tgaggagaggttgtctgtgatgagttcgctgtattaatgtcgaatataacacagatggcc 65

                 
Query: 64 tgttttc 70
          |||||||
Sbjct: 66 tgttttc 72




>RF00641;mir-154;ABRQ01054379.1/507-585 9813:Procavia capensis
          (cape rock hyrax)
          Length = 79

 Score =  117 bits (59), Expect = 2e-26
 Identities = 71/75 (94%)
 Strand = Plus / Plus

                                                                      
Query: 2  cttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatgg 61
          |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5  cttgaggagaggctgtctgtgatgagttcgctttatcaatgacgaatataacacagatgg 64

                         
Query: 62 cctgttttcaatacc 76
          |||||| ||| ||||
Sbjct: 65 cctgttctcagtacc 79




>RF00641;mir-154;AAGW01274484.1/405-482 9986:Oryctolagus cuniculus
          (rabbit)
          Length = 78

 Score =  103 bits (52), Expect = 3e-22
 Identities = 64/68 (94%)
 Strand = Plus / Plus

                                                                      
Query: 4  tgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcc 63
          ||||| |||||||||||||||||||||||| |||||| | ||||||||||||||||||||
Sbjct: 6  tgaggggaggttgtctgtgatgagttcgctgtattaaagccgaatataacacagatggcc 65

                  
Query: 64 tgttttca 71
          ||||||||
Sbjct: 66 tgttttca 73




>RF00641;mir-154;AAGV020430602.1/10-84 9361:Dasypus novemcinctus
          (nine-banded armadillo)
          Length = 75

 Score = 81.8 bits (41), Expect = 1e-15
 Identities = 55/57 (96%), Gaps = 2/57 (3%)
 Strand = Plus / Plus

                                                                   
Query: 15 tgtctgtgatgagttcgctttattaatgacgaatataacacagatggcctgttttca 71
          |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 16 tgtctgtgatgagttcgctttatt-atgacgaatat-acacagatggcctgttttca 70