miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAQR01664935.1/16813-16890 30611:Otolemur
garnettii (small-eared galago)
Length = 78
Score = 123 bits (62), Expect = 3e-28
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 3 ttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggc 62
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ttgagaagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggc 65
Query: 63 ctgttt 68
||||||
Sbjct: 66 ctgttt 71
>RF00641;mir-154;AAKN02051949.1/133347-133425 10141:Cavia
porcellus (domestic guinea pig)
Length = 79
Score = 119 bits (60), Expect = 5e-27
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 8 gagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcctgtt 67
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcctgtc 70
Query: 68 ttca 71
||||
Sbjct: 71 ttca 74
>RF00641;mir-154;AAYZ01254085.1/11201-11278 9978:Ochotona princeps
(American pika)
Length = 78
Score = 117 bits (59), Expect = 2e-26
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 4 tgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcc 63
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 6 tgaggagaggttgtctgtgatgagttcgctgtattaatgtcgaatataacacagatggcc 65
Query: 64 tgttttc 70
|||||||
Sbjct: 66 tgttttc 72
>RF00641;mir-154;ABRQ01054379.1/507-585 9813:Procavia capensis
(cape rock hyrax)
Length = 79
Score = 117 bits (59), Expect = 2e-26
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 2 cttgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatgg 61
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5 cttgaggagaggctgtctgtgatgagttcgctttatcaatgacgaatataacacagatgg 64
Query: 62 cctgttttcaatacc 76
|||||| ||| ||||
Sbjct: 65 cctgttctcagtacc 79
>RF00641;mir-154;AAGW01274484.1/405-482 9986:Oryctolagus cuniculus
(rabbit)
Length = 78
Score = 103 bits (52), Expect = 3e-22
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 4 tgaggagaggttgtctgtgatgagttcgctttattaatgacgaatataacacagatggcc 63
||||| |||||||||||||||||||||||| |||||| | ||||||||||||||||||||
Sbjct: 6 tgaggggaggttgtctgtgatgagttcgctgtattaaagccgaatataacacagatggcc 65
Query: 64 tgttttca 71
||||||||
Sbjct: 66 tgttttca 73
>RF00641;mir-154;AAGV020430602.1/10-84 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 75
Score = 81.8 bits (41), Expect = 1e-15
Identities = 55/57 (96%), Gaps = 2/57 (3%)
Strand = Plus / Plus
Query: 15 tgtctgtgatgagttcgctttattaatgacgaatataacacagatggcctgttttca 71
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 16 tgtctgtgatgagttcgctttatt-atgacgaatat-acacagatggcctgttttca 70
