miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32511_mmu-mir-3074-1:mirbase
Length = 85
Score = 168 bits (85), Expect = 6e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 14 gggctcgactcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagc 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggctcgactcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagc 60
Query: 74 tcagtaggcaccggagggcgggtcc 98
|||||||||||||||||||||||||
Sbjct: 61 tcagtaggcaccggagggcgggtcc 85
>32512_mmu-mir-3074-1:mirbase
Length = 85
Score = 168 bits (85), Expect = 6e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 14 gggctcgactcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagc 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggctcgactcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagc 60
Query: 74 tcagtaggcaccggagggcgggtcc 98
|||||||||||||||||||||||||
Sbjct: 61 tcagtaggcaccggagggcgggtcc 85
>29230_hsa-mir-3074:mirbase
Length = 81
Score = 153 bits (77), Expect = 3e-38
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 16 gctcgactcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctc 75
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 gctcgactcctgttcctgctgaactgagccagtgtgtaaaatgagaactgatatcagctc 60
Query: 76 agtaggcaccggagggcgggt 96
|||||||||||||||||||||
Sbjct: 61 agtaggcaccggagggcgggt 81
>29231_hsa-mir-3074:mirbase
Length = 81
Score = 153 bits (77), Expect = 3e-38
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 16 gctcgactcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctc 75
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 gctcgactcctgttcctgctgaactgagccagtgtgtaaaatgagaactgatatcagctc 60
Query: 76 agtaggcaccggagggcgggt 96
|||||||||||||||||||||
Sbjct: 61 agtaggcaccggagggcgggt 81
>33929_ssc-mir-24-2:mirbase
Length = 80
Score = 151 bits (76), Expect = 1e-37
Identities = 79/80 (98%)
Strand = Plus / Minus
Query: 18 tcgactcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcag 77
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 80 tcgactcctgttcctgctgaactgagccagtgtgtaaaatgagaactgatatcagctcag 21
Query: 78 taggcaccggagggcgggtc 97
||||||||||||||||||||
Sbjct: 20 taggcaccggagggcgggtc 1
>26413_tgu-mir-24:mirbase
Length = 132
Score = 145 bits (73), Expect = 8e-36
Identities = 82/85 (96%)
Strand = Plus / Minus
Query: 15 ggctcgactcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagct 74
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 132 ggctcgactcctgttcctgctgaactgagccagtgtgtaaaatcagaactgatatcagct 73
Query: 75 cagtaggcaccggagggcgggtcca 99
|||||||||||||||| ||||||||
Sbjct: 72 cagtaggcaccggaggacgggtcca 48
>31791_mmu-mir-24-1:mirbase
Length = 68
Score = 135 bits (68), Expect = 8e-33
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtagg 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtagg 9
Query: 82 caccggag 89
||||||||
Sbjct: 8 caccggag 1
>32675_rno-mir-24-1:mirbase
Length = 68
Score = 135 bits (68), Expect = 8e-33
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtagg 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtagg 9
Query: 82 caccggag 89
||||||||
Sbjct: 8 caccggag 1
>26962_eca-mir-24-2:mirbase
Length = 68
Score = 127 bits (64), Expect = 2e-30
Identities = 67/68 (98%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtagg 81
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtgtgtaaaatgagaactgatatcagctcagtagg 9
Query: 82 caccggag 89
||||||||
Sbjct: 8 caccggag 1
>27667_mml-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 2e-30
Identities = 67/68 (98%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtagg 81
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtgtgtaaaatgagaactgatatcagctcagtagg 9
Query: 82 caccggag 89
||||||||
Sbjct: 8 caccggag 1
>28183_mne-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 2e-30
Identities = 67/68 (98%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtagg 81
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtgtgtaaaatgagaactgatatcagctcagtagg 9
Query: 82 caccggag 89
||||||||
Sbjct: 8 caccggag 1
>28377_hsa-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 2e-30
Identities = 67/68 (98%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtagg 81
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtgtgtaaaatgagaactgatatcagctcagtagg 9
Query: 82 caccggag 89
||||||||
Sbjct: 8 caccggag 1
>30056_ppa-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 2e-30
Identities = 67/68 (98%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtagg 81
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtgtgtaaaatgagaactgatatcagctcagtagg 9
Query: 82 caccggag 89
||||||||
Sbjct: 8 caccggag 1
>30768_ppy-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 2e-30
Identities = 67/68 (98%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtagg 81
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtgtgtaaaatgagaactgatatcagctcagtagg 9
Query: 82 caccggag 89
||||||||
Sbjct: 8 caccggag 1
>33147_bta-mir-24-1:mirbase
Length = 68
Score = 127 bits (64), Expect = 2e-30
Identities = 67/68 (98%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtagg 81
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtgtgtaaaatgagaactgatatcagctcagtagg 9
Query: 82 caccggag 89
||||||||
Sbjct: 8 caccggag 1
>30163_ptr-mir-24-1:mirbase
Length = 67
Score = 125 bits (63), Expect = 8e-30
Identities = 66/67 (98%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtagg 81
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 67 ctcctgttcctgctgaactgagccagtgtgtaaaatgagaactgatatcagctcagtagg 8
Query: 82 caccgga 88
|||||||
Sbjct: 7 caccgga 1
>25908_gga-mir-24:mirbase
Length = 68
Score = 111 bits (56), Expect = 1e-25
Identities = 65/68 (95%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtagg 81
||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtatgtaaaatcagaactgatatcagctcagtagg 9
Query: 82 caccggag 89
||||||||
Sbjct: 8 caccggag 1
>26639_cfa-mir-24-1:mirbase
Length = 62
Score = 107 bits (54), Expect = 2e-24
Identities = 60/62 (96%)
Strand = Plus / Minus
Query: 24 cctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtaggca 83
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 62 cctgttcctgctgaactgagccagtgtgtacaatgagaactgatatcagctcagtaggca 3
Query: 84 cc 85
||
Sbjct: 2 cc 1
>25716_xtr-mir-24a:mirbase
Length = 67
Score = 101 bits (51), Expect = 1e-22
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtagg 81
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 67 ctcctgttcctgctgaactgagccagtgtgtgaaat-agaactgatatcagttcagtagg 9
Query: 82 cac 84
|||
Sbjct: 8 cac 6
>25717_xtr-mir-24a:mirbase
Length = 67
Score = 101 bits (51), Expect = 1e-22
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtagg 81
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 67 ctcctgttcctgctgaactgagccagtgtgtgaaat-agaactgatatcagttcagtagg 9
Query: 82 cac 84
|||
Sbjct: 8 cac 6
>31442_oan-mir-24:mirbase
Length = 84
Score = 93.7 bits (47), Expect = 3e-20
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Minus
Query: 21 actcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtag 80
||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 77 actcctgttcctgctgaactgagccagtgggtcaac-gagaactgatatcagctcagtag 19
Query: 81 gcaccggaggg 91
|||| ||||||
Sbjct: 18 gcactggaggg 8
>27345_mdo-mir-24-1:mirbase
Length = 57
Score = 89.7 bits (45), Expect = 4e-19
Identities = 54/57 (94%)
Strand = Plus / Minus
Query: 29 tcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtaggcacc 85
|||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||
Sbjct: 57 tcctgctgaactgagccagtgtgtaaaatcagaactgttatcagctcagtaggcacc 1
>31792_mmu-mir-24-2:mirbase
Length = 107
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 14 gggctcgactcctgttcctgctgaactgagccagtg 49
||||| ||||||||||||||||||||||||||||||
Sbjct: 93 gggctggactcctgttcctgctgaactgagccagtg 58
>32513_mmu-mir-3074-2:mirbase
Length = 83
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 14 gggctcgactcctgttcctgctgaactgagccagtg 49
||||| ||||||||||||||||||||||||||||||
Sbjct: 1 gggctggactcctgttcctgctgaactgagccagtg 36
>32514_mmu-mir-3074-2:mirbase
Length = 83
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 14 gggctcgactcctgttcctgctgaactgagccagtg 49
||||| ||||||||||||||||||||||||||||||
Sbjct: 1 gggctggactcctgttcctgctgaactgagccagtg 36
>32676_rno-mir-24-2:mirbase
Length = 108
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 14 gggctcgactcctgttcctgctgaactgagccagtg 49
||||| ||||||||||||||||||||||||||||||
Sbjct: 93 gggctggactcctgttcctgctgaactgagccagtg 58
>34230_dre-mir-24-3:mirbase
Length = 142
Score = 63.9 bits (32), Expect = 2e-11
Identities = 62/71 (87%), Gaps = 2/71 (2%)
Strand = Plus / Minus
Query: 20 gactcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagta 79
||||||||||||||||||||||||||||||| || | || |||| ||||||||||||
Sbjct: 106 gactcctgttcctgctgaactgagccagtgtttgca--cagtactgtaatcagctcagta 49
Query: 80 ggcaccggagg 90
||||| |||||
Sbjct: 48 ggcacgggagg 38
>34228_dre-mir-24-1:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 4e-10
Identities = 60/69 (86%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 21 actcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtag 80
||||||||||||||||||||||||||||| | | | ||||||||||||||||| ||
Sbjct: 74 actcctgttcctgctgaactgagccagtgatt--tactacaactgatatcagctcagaag 17
Query: 81 gcaccggag 89
|||||||||
Sbjct: 16 gcaccggag 8
>34709_tni-mir-24-1:mirbase
Length = 70
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 20 gactcctgttcctgctgaactgagccagtg 49
||||||||||||||||||||||||||||||
Sbjct: 70 gactcctgttcctgctgaactgagccagtg 41
>27346_mdo-mir-24-2:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 20 gactcctgttcctgctgaactgagccagt 48
|||||||||||||||||||||||||||||
Sbjct: 72 gactcctgttcctgctgaactgagccagt 44
>27668_mml-mir-24-2:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 23 tcctgttcctgctgaactgagccagtgtg 51
|||||||||||||||||||||||||||||
Sbjct: 73 tcctgttcctgctgaactgagccagtgtg 45
>28184_mne-mir-24-2:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 23 tcctgttcctgctgaactgagccagtgtg 51
|||||||||||||||||||||||||||||
Sbjct: 73 tcctgttcctgctgaactgagccagtgtg 45
>33148_bta-mir-24-2:mirbase
Length = 72
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 24 cctgttcctgctgaactgagccagtgtg 51
||||||||||||||||||||||||||||
Sbjct: 72 cctgttcctgctgaactgagccagtgtg 45
>34561_fru-mir-24-1:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 21 actcctgttcctgctgaactgagccagt 48
||||||||||||||||||||||||||||
Sbjct: 79 actcctgttcctgctgaactgagccagt 52
>34562_fru-mir-24-1:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 21 actcctgttcctgctgaactgagccagt 48
||||||||||||||||||||||||||||
Sbjct: 79 actcctgttcctgctgaactgagccagt 52
>26961_eca-mir-24:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagt 48
|||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagt 42
>28270_ggo-mir-24:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 24 cctgttcctgctgaactgagccagtgt 50
|||||||||||||||||||||||||||
Sbjct: 72 cctgttcctgctgaactgagccagtgt 46
>28378_hsa-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 24 cctgttcctgctgaactgagccagtgt 50
|||||||||||||||||||||||||||
Sbjct: 72 cctgttcctgctgaactgagccagtgt 46
>30057_ppa-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 24 cctgttcctgctgaactgagccagtgt 50
|||||||||||||||||||||||||||
Sbjct: 72 cctgttcctgctgaactgagccagtgt 46
>30164_ptr-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 24 cctgttcctgctgaactgagccagtgt 50
|||||||||||||||||||||||||||
Sbjct: 72 cctgttcctgctgaactgagccagtgt 46
>30769_ppy-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 24 cctgttcctgctgaactgagccagtgt 50
|||||||||||||||||||||||||||
Sbjct: 72 cctgttcctgctgaactgagccagtgt 46
>25444_pma-mir-24:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 20 gactcctgttcctgctgaactgagccagtg 49
|||| |||||||||||||||||||||||||
Sbjct: 84 gacttctgttcctgctgaactgagccagtg 55
>26640_cfa-mir-24-2:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 24 cctgttcctgctgaactgagccagt 48
|||||||||||||||||||||||||
Sbjct: 62 cctgttcctgctgaactgagccagt 38
>33928_ssc-mir-24-1:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 24 cctgttcctgctgaactgagccagt 48
|||||||||||||||||||||||||
Sbjct: 72 cctgttcctgctgaactgagccagt 48
>34229_dre-mir-24-2:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 24 cctgttcctgctgaactgagccagt 48
|||||||||||||||||||||||||
Sbjct: 73 cctgttcctgctgaactgagccagt 49
>34231_dre-mir-24-4:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 24 cctgttcctgctgaactgagccag 47
||||||||||||||||||||||||
Sbjct: 78 cctgttcctgctgaactgagccag 55
>34563_fru-mir-24-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 24 cctgttcctgctgaactgagccag 47
||||||||||||||||||||||||
Sbjct: 73 cctgttcctgctgaactgagccag 50
>34710_tni-mir-24-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 24 cctgttcctgctgaactgagccag 47
||||||||||||||||||||||||
Sbjct: 73 cctgttcctgctgaactgagccag 50
