miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00178;mir-24;AADN02067827.1/6632-6699 9031:Gallus gallus
(chicken)
Length = 68
Score = 111 bits (56), Expect = 2e-24
Identities = 65/68 (95%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtagg 81
||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtatgtaaaatcagaactgatatcagctcagtagg 9
Query: 82 caccggag 89
||||||||
Sbjct: 8 caccggag 1
>RF00178;mir-24;AAKN02038501.1/43560-43494 10141:Cavia porcellus
(domestic guinea pig)
Length = 67
Score = 103 bits (52), Expect = 5e-22
Identities = 65/68 (95%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtagg 81
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 67 ctcctgttcctgctgaactgagccagtgtgtacaa-gagaactgatatcagctcagtagg 9
Query: 82 caccggag 89
||||||||
Sbjct: 8 caccggag 1
>RF00178;mir-24;CR847548.8/141549-141614 7955:Danio rerio
(zebrafish)
Length = 66
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagtgt 50
|||||||||||||||||||||||||||||
Sbjct: 66 ctcctgttcctgctgaactgagccagtgt 38
>RF00178;mir-24;CT027840.6/8959-9024 7955:Danio rerio (zebrafish)
Length = 66
Score = 58.0 bits (29), Expect = 3e-08
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtagg 81
|||||||||||||||||||||||||||| | | | ||||||||||||||||| |||
Sbjct: 66 ctcctgttcctgctgaactgagccagtgatt--tactacaactgatatcagctcagaagg 9
Query: 82 caccggag 89
||||||||
Sbjct: 8 caccggag 1
>RF00178;mir-24;CAAB01008725.1/106-172 31033:Takifugu rubripes
Length = 67
Score = 56.0 bits (28), Expect = 1e-07
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagtgtgtgaaatgagaactgatatcagctcagtagg 81
|||| |||||||||||||||||||||||| ||| || ||||| | |||||||||||||
Sbjct: 67 ctccggttcctgctgaactgagccagtgtctgacat-ccaactgttttcagctcagtagg 9
Query: 82 caccggag 89
||| ||||
Sbjct: 8 cacaggag 1
>RF00178;mir-24;BAAF04040483.1/10387-10453 8090:Oryzias latipes
(Japanese medaka)
Length = 67
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagtg 49
||||||||||||||||||||||||||||
Sbjct: 67 ctcctgttcctgctgaactgagccagtg 40
>RF00178;mir-24;AAVX01198958.1/114-181 7868:Callorhinchus milii
(ghost shark)
Length = 68
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagtg 49
||||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagtg 41
>RF00178;mir-24;ABRQ01065900.1/2864-2931 9813:Procavia capensis
(cape rock hyrax)
Length = 68
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagt 48
|||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagt 42
>RF00178;mir-24;AAWZ01000886.1/15313-15246 28377:Anolis
carolinensis (green anole)
Length = 68
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagt 48
|||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagt 42
>RF00178;mir-24;BAAF04082680.1/2546-2479 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagt 48
|||||||||||||||||||||||||||
Sbjct: 68 ctcctgttcctgctgaactgagccagt 42
>RF00178;mir-24;AAPY01721327.1/524-457 37347:Tupaia belangeri
(northern tree shrew)
Length = 68
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 23 tcctgttcctgctgaactgagccagt 48
||||||||||||||||||||||||||
Sbjct: 67 tcctgttcctgctgaactgagccagt 42
>RF00178;mir-24;ABRO01400204.1/704-771 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 68
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 24 cctgttcctgctgaactgagccagtg 49
||||||||||||||||||||||||||
Sbjct: 66 cctgttcctgctgaactgagccagtg 41
>RF00178;mir-24;CU138547.13/98214-98280 7955:Danio rerio
(zebrafish)
Length = 67
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 24 cctgttcctgctgaactgagccagt 48
|||||||||||||||||||||||||
Sbjct: 65 cctgttcctgctgaactgagccagt 41
>RF00178;mir-24;AANH01005378.1/80152-80082 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 71
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagtgt 50
|||| ||||||||||||||||||||||||
Sbjct: 71 ctccggttcctgctgaactgagccagtgt 43
>RF00178;mir-24;CU855875.13/13048-13115 7955:Danio rerio
(zebrafish)
Length = 68
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 24 cctgttcctgctgaactgagccag 47
||||||||||||||||||||||||
Sbjct: 66 cctgttcctgctgaactgagccag 43
>RF00178;mir-24;BAAE01102385.1/1423-1489 8090:Oryzias latipes
(Japanese medaka)
Length = 67
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 24 cctgttcctgctgaactgagccag 47
||||||||||||||||||||||||
Sbjct: 65 cctgttcctgctgaactgagccag 42
>RF00178;mir-24;AANN01357153.1/1098-1031 9365:Erinaceus europaeus
(western European hedgehog)
Length = 68
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagt 48
|||| ||||||||||||||||||||||
Sbjct: 68 ctccggttcctgctgaactgagccagt 42
>RF00178;mir-24;BAAF04038250.1/1131-1201 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 22 ctcctgttcctgctgaactgagccagt 48
|||| ||||||||||||||||||||||
Sbjct: 71 ctccggttcctgctgaactgagccagt 45
