miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33834_oar-mir-382:mirbase
Length = 126
Score = 194 bits (98), Expect = 1e-50
Identities = 107/110 (97%)
Strand = Plus / Minus
Query: 4 cttagaggtagcatttggtactgaaaaaagtgttgtccgtgaatgattcgtcacaagtaa 63
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 126 cttagaggtagtatttggtactgaaaaaagtgttgtccgtgaatgattcgtcataagtaa 67
Query: 64 agcgaatccaccacgaacaacttctcttcaagtaccacagaaaagcagag 113
||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 66 agcgaatccaccacgaacaacttctcttcaagtaccacagaaaggcagag 17
>33835_oar-mir-382:mirbase
Length = 126
Score = 194 bits (98), Expect = 1e-50
Identities = 107/110 (97%)
Strand = Plus / Minus
Query: 4 cttagaggtagcatttggtactgaaaaaagtgttgtccgtgaatgattcgtcacaagtaa 63
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 126 cttagaggtagtatttggtactgaaaaaagtgttgtccgtgaatgattcgtcataagtaa 67
Query: 64 agcgaatccaccacgaacaacttctcttcaagtaccacagaaaagcagag 113
||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 66 agcgaatccaccacgaacaacttctcttcaagtaccacagaaaggcagag 17
>33788_bta-mir-3578:mirbase
Length = 86
Score = 163 bits (82), Expect = 4e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 17 tttggtactgaaaaaagtgttgtccgtgaatgattcgtcacaagtaaagcgaatccacca 76
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tttggtactgaaaaaagtgttgtccgtgaatgattcgtcataagtaaagcgaatccacca 60
Query: 77 cgaacaacttctcttcaagtaccaca 102
||||||||||||||||||||||||||
Sbjct: 61 cgaacaacttctcttcaagtaccaca 86
>32898_rno-mir-382:mirbase
Length = 80
Score = 159 bits (80), Expect = 5e-40
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 20 ggtactgaaaaaagtgttgtccgtgaatgattcgtcacaagtaaagcgaatccaccacga 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 ggtactgaaaaaagtgttgtccgtgaatgattcgtcacaagtaaagcgaatccaccacga 21
Query: 80 acaacttctcttcaagtacc 99
||||||||||||||||||||
Sbjct: 20 acaacttctcttcaagtacc 1
>32055_mmu-mir-382:mirbase
Length = 76
Score = 151 bits (76), Expect = 1e-37
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 22 tactgaaaaaagtgttgtccgtgaatgattcgtcacaagtaaagcgaatccaccacgaac 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 tactgaaaaaagtgttgtccgtgaatgattcgtcacaagtaaagcgaatccaccacgaac 17
Query: 82 aacttctcttcaagta 97
||||||||||||||||
Sbjct: 16 aacttctcttcaagta 1
>34085_ssc-mir-382:mirbase
Length = 77
Score = 145 bits (73), Expect = 8e-36
Identities = 76/77 (98%)
Strand = Plus / Minus
Query: 20 ggtactgaaaaaagtgttgtccgtgaatgattcgtcacaagtaaagcgaatccaccacga 79
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 77 ggtactgaaaaaagtgttgtccgtgaatgattcgtcataagtaaagcgaatccaccacga 18
Query: 80 acaacttctcttcaagt 96
|||||||||||||||||
Sbjct: 17 acaacttctcttcaagt 1
>27164_eca-mir-382:mirbase
Length = 76
Score = 143 bits (72), Expect = 3e-35
Identities = 75/76 (98%)
Strand = Plus / Minus
Query: 22 tactgaaaaaagtgttgtccgtgaatgattcgtcacaagtaaagcgaatccaccacgaac 81
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 76 tactgaaaaaagtgttgtccgtgaatgattcgtcataagtaaagcgaatccaccacgaac 17
Query: 82 aacttctcttcaagta 97
||||||||||||||||
Sbjct: 16 aacttctcttcaagta 1
>27888_mml-mir-382:mirbase
Length = 76
Score = 143 bits (72), Expect = 3e-35
Identities = 75/76 (98%)
Strand = Plus / Minus
Query: 22 tactgaaaaaagtgttgtccgtgaatgattcgtcacaagtaaagcgaatccaccacgaac 81
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 76 tactgaaaaaagtgttgtccgtgaatgattcgtcataagtaaagcgaatccaccacgaac 17
Query: 82 aacttctcttcaagta 97
||||||||||||||||
Sbjct: 16 aacttctcttcaagta 1
>28635_hsa-mir-382:mirbase
Length = 76
Score = 143 bits (72), Expect = 3e-35
Identities = 75/76 (98%)
Strand = Plus / Minus
Query: 22 tactgaaaaaagtgttgtccgtgaatgattcgtcacaagtaaagcgaatccaccacgaac 81
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 76 tactgaaaaaagtgttgtccgtgaatgattcgtcataagtaaagcgaatccaccacgaac 17
Query: 82 aacttctcttcaagta 97
||||||||||||||||
Sbjct: 16 aacttctcttcaagta 1
>33359_bta-mir-382:mirbase
Length = 76
Score = 143 bits (72), Expect = 3e-35
Identities = 75/76 (98%)
Strand = Plus / Minus
Query: 22 tactgaaaaaagtgttgtccgtgaatgattcgtcacaagtaaagcgaatccaccacgaac 81
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 76 tactgaaaaaagtgttgtccgtgaatgattcgtcataagtaaagcgaatccaccacgaac 17
Query: 82 aacttctcttcaagta 97
||||||||||||||||
Sbjct: 16 aacttctcttcaagta 1
>30362_ptr-mir-382:mirbase
Length = 75
Score = 141 bits (71), Expect = 1e-34
Identities = 74/75 (98%)
Strand = Plus / Minus
Query: 22 tactgaaaaaagtgttgtccgtgaatgattcgtcacaagtaaagcgaatccaccacgaac 81
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 75 tactgaaaaaagtgttgtccgtgaatgattcgtcataagtaaagcgaatccaccacgaac 16
Query: 82 aacttctcttcaagt 96
|||||||||||||||
Sbjct: 15 aacttctcttcaagt 1
>30989_ppy-mir-382:mirbase
Length = 76
Score = 135 bits (68), Expect = 8e-33
Identities = 74/76 (97%)
Strand = Plus / Minus
Query: 22 tactgaaaaaagtgttgtccgtgaatgattcgtcacaagtaaagcgaatccaccacgaac 81
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 76 tactgaaaaaagtgttgtccgtgaatgattcgtcataagtaaagggaatccaccacgaac 17
Query: 82 aacttctcttcaagta 97
||||||||||||||||
Sbjct: 16 aacttctcttcaagta 1
>26833_cfa-mir-382:mirbase
Length = 57
Score = 105 bits (53), Expect = 7e-24
Identities = 56/57 (98%)
Strand = Plus / Minus
Query: 30 aaagtgttgtccgtgaatgattcgtcacaagtaaagcgaatccaccacgaacaactt 86
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 57 aaagtgttgtccgtgaatgattcgtcataagtaaagcgaatccaccacgaacaactt 1
>28312_ggo-mir-154:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 9e-08
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 40 ccgtgaatgattcgtcacaagtaaagcgaatccaccacgaacaacttctcttcaagtacc 99
||||| |||||||||||||| ||||||||| || |||| | ||| | ||||||||||||
Sbjct: 62 ccgtgtatgattcgtcacaaataaagcgaaggcaacacggataacctatcttcaagtacc 3
Query: 100 ac 101
||
Sbjct: 2 ac 1
>28481_hsa-mir-154:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 9e-08
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 40 ccgtgaatgattcgtcacaagtaaagcgaatccaccacgaacaacttctcttcaagtacc 99
||||| |||||||||||||| ||||||||| || |||| | ||| | ||||||||||||
Sbjct: 62 ccgtgtatgattcgtcacaaataaagcgaaggcaacacggataacctatcttcaagtacc 3
Query: 100 ac 101
||
Sbjct: 2 ac 1
>30101_ppa-mir-154:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 9e-08
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 40 ccgtgaatgattcgtcacaagtaaagcgaatccaccacgaacaacttctcttcaagtacc 99
||||| |||||||||||||| ||||||||| || |||| | ||| | ||||||||||||
Sbjct: 62 ccgtgtatgattcgtcacaaataaagcgaaggcaacacggataacctatcttcaagtacc 3
Query: 100 ac 101
||
Sbjct: 2 ac 1
>30249_ptr-mir-154:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 9e-08
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 40 ccgtgaatgattcgtcacaagtaaagcgaatccaccacgaacaacttctcttcaagtacc 99
||||| |||||||||||||| ||||||||| || |||| | ||| | ||||||||||||
Sbjct: 62 ccgtgtatgattcgtcacaaataaagcgaaggcaacacggataacctatcttcaagtacc 3
Query: 100 ac 101
||
Sbjct: 2 ac 1
>30863_ppy-mir-154:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 9e-08
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 40 ccgtgaatgattcgtcacaagtaaagcgaatccaccacgaacaacttctcttcaagtacc 99
||||| |||||||||||||| ||||||||| || |||| | ||| | ||||||||||||
Sbjct: 62 ccgtgtatgattcgtcacaaataaagcgaaggcaacacggataacctatcttcaagtacc 3
Query: 100 ac 101
||
Sbjct: 2 ac 1
>33242_bta-mir-154:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 40 ccgtgaatgattcgtcacaagtaaagcgaa 69
||||| ||||||||||||||||||||||||
Sbjct: 62 ccgtgtatgattcgtcacaagtaaagcgaa 33
>33799_oar-mir-154a:mirbase
Length = 105
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 40 ccgtgaatgattcgtcacaagtaaagcgaa 69
||||| ||||||||||||||||||||||||
Sbjct: 71 ccgtgtatgattcgtcacaagtaaagcgaa 42
>33800_oar-mir-154a:mirbase
Length = 105
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 40 ccgtgaatgattcgtcacaagtaaagcgaa 69
||||| ||||||||||||||||||||||||
Sbjct: 71 ccgtgtatgattcgtcacaagtaaagcgaa 42
>27765_mml-mir-154:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 40 ccgtgaatgattcgtcacaagtaaagcgaatccaccacgaacaacttctcttcaagtacc 99
||||| |||||||||||||| ||||||||| || |||| | ||| | ||||||||||||
Sbjct: 62 ccgtgtatgattcgtcacaaataaagcgaaggcaacacggataacctatcttcaagtacc 3
>28220_mne-mir-154:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 40 ccgtgaatgattcgtcacaagtaaagcgaatccaccacgaacaacttctcttcaagtacc 99
||||| |||||||||||||| ||||||||| || |||| | ||| | ||||||||||||
Sbjct: 62 ccgtgtatgattcgtcacaaataaagcgaaggcaacacggataacctatcttcaagtacc 3
