miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054372.1/2194-2273 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 123 bits (62), Expect = 6e-28
Identities = 74/78 (94%)
Strand = Plus / Minus
Query: 22 gatactgaaaacgtggattttcctctacgattagtcattaatattgtactcatagaagga 81
||||||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||
Sbjct: 80 gatactgaaaacgtggattttcctctatgattaatcataaataatgtactcatagaagga 21
Query: 82 gaatctaccttttaaata 99
||||||||||||||||||
Sbjct: 20 gaatctaccttttaaata 3
>RF00641;mir-154;AADB02234032.1/262-341 9606:Homo sapiens (human)
Length = 80
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 22 gatactgaaaacgtggattttcctctacgatta 54
||||||||||||||||||||||||||| |||||
Sbjct: 80 gatactgaaaacgtggattttcctctatgatta 48
>RF00641;mir-154;AAIY01443497.1/2027-2105 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 56.0 bits (28), Expect = 1e-07
Identities = 65/76 (85%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 24 tactgaaaacgtggattttcctctacgattagtcattaatattgtactcatagaaggaga 83
||||||||||||||||||||||||| ||||| ||| || | ||| |||| ||||| |
Sbjct: 77 tactgaaaacgtggattttcctctatgattaaccatcaa-aacgtaaccataaaaggaaa 19
Query: 84 atctaccttttaaata 99
||||||||||||||||
Sbjct: 18 atctaccttttaaata 3
>RF00641;mir-154;AAGW01206553.1/1248-1327 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 52.0 bits (26), Expect = 2e-06
Identities = 65/78 (83%)
Strand = Plus / Minus
Query: 22 gatactgaaaacgtggattttcctctacgattagtcattaatattgtactcatagaagga 81
|||||||||||| |||||||||||||| ||||| || ||| ||| ||||||||||
Sbjct: 80 gatactgaaaacatggattttcctctatgattaaccagcaatcacgtaaacatagaagga 21
Query: 82 gaatctaccttttaaata 99
|||| ||||||||||||
Sbjct: 20 aaatccaccttttaaata 3
>RF00641;mir-154;AAYZ01424898.1/1376-1455 9978:Ochotona princeps
(American pika)
Length = 80
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 22 gatactgaaaacgtggattttcctctacgatta 54
||||||||||||||||| ||||||||| |||||
Sbjct: 80 gatactgaaaacgtggaatttcctctatgatta 48
>RF00641;mir-154;AAGW01206553.1/954-1033 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 22 gatactgaaaacgtggattttcctctacgatta 54
||||||||||| ||||||||||||||| |||||
Sbjct: 80 gatactgaaaatgtggattttcctctatgatta 48
>RF00641;mir-154;ABRN01448850.1/16136-16215 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 80
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 22 gatactgaaaacgtggattttcctcta 48
||||||||||| |||||||||||||||
Sbjct: 80 gatactgaaaatgtggattttcctcta 54
>RF00641;mir-154;AANG01662501.1/383-463 9685:Felis catus (domestic
cat)
Length = 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 28 gaaaacgtggattttcctctacgatta 54
||||||||||||||||||||| |||||
Sbjct: 75 gaaaacgtggattttcctctatgatta 49
>RF00641;mir-154;AAEX02019639.1/145777-145856 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 29 aaaacgtggattttcctctacgatta 54
|||||||||||||||||||| |||||
Sbjct: 73 aaaacgtggattttcctctatgatta 48
>RF00641;mir-154;AANU01197805.1/77711-77790 9544:Macaca mulatta
(rhesus monkey)
Length = 80
Score = 44.1 bits (22), Expect = 4e-04
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 22 gatactgaaaacgtggattttcctctacgattagtcattaatattgtactcatagaagga 81
|||||||| || ||||||||||||||| ||||| ||| ||| |||| ||||||||||
Sbjct: 80 gatactgacaatgtggattttcctctatgattaaccataaatcctgtaagcatagaagga 21
Query: 82 gaatctacctttta 95
||| ||||||||
Sbjct: 20 acatccacctttta 7
