miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00237;mir-9;BAAF04020747.1/88-147 8090:Oryzias latipes
(Japanese medaka)
Length = 60
Score = 87.7 bits (44), Expect = 3e-17
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 32 actttcggttatctagctttatgaagaccaatacactcatacagctagataaccaaagat 91
|||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct: 60 actttcggttatctagctttatgacgagcagaacactcatacagctagataaccaaagat 1
>RF00237;mir-9;AAGU02809341.1/1530-1589 9785:Loxodonta africana
(African savanna elephant)
Length = 60
Score = 83.8 bits (42), Expect = 5e-16
Identities = 51/54 (94%)
Strand = Plus / Minus
Query: 32 actttcggttatctagctttatgaagaccaatacactcatacagctagataacc 85
|||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 60 actttcggttatctagctttatgaaggaaaatacactcatacagctagataacc 7
>RF00237;mir-9;BAAF04134102.1/794-855 8090:Oryzias latipes
(Japanese medaka)
Length = 62
Score = 73.8 bits (37), Expect = 5e-13
Identities = 58/63 (92%), Gaps = 4/63 (6%)
Strand = Plus / Minus
Query: 32 actttcggttatctagctttatgaagaccaatac---actcatacagctagataaccaaa 88
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 62 actttcggttatctagctttatgaagaa-aatacggcactcatacagctagataaccaaa 4
Query: 89 gat 91
|||
Sbjct: 3 gat 1
>RF00237;mir-9;AAVX01065791.1/2124-2183 7868:Callorhinchus milii
(ghost shark)
Length = 60
Score = 69.9 bits (35), Expect = 7e-12
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 32 actttcggttatctagctttatgaagaccaatacactcatacagctagataaccaaaga 90
|||||||||||| ||||||||||| | |||| |||||||||||||||||||||||||
Sbjct: 60 actttcggttatttagctttatgacggtgaataaactcatacagctagataaccaaaga 2
>RF00237;mir-9;ABVD01485145.1/30-90 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 61
Score = 65.9 bits (33), Expect = 1e-10
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Minus
Query: 32 actttcggttatctagctttatga-agaccaatacactcatacagctagataaccaaaga 90
|||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct: 61 actttcggttatctagctttatgagactccacaccactcatacagctagataaccaaaga 2
Query: 91 t 91
|
Sbjct: 1 t 1
>RF00237;mir-9;ABRT010326462.1/47-105 9478:Tarsius syrichta
(Philippine tarsier)
Length = 59
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 32 actttcggttatctagctttatgaagaccaata 64
|||||||||||||||||||||||||||||||||
Sbjct: 59 actttcggttatctagctttatgaagaccaata 27
>RF00237;mir-9;AAPN01432088.1/257-198 9258:Ornithorhynchus
anatinus (platypus)
Length = 60
Score = 63.9 bits (32), Expect = 4e-10
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 35 ttcggttatctagctttatgaagaccaatacactcatacagctagataaccaaaga 90
||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 57 ttcggttctctagctttatgacatcacatacactcatacagctagataaccaaaga 2
>RF00237;mir-9;AAGV020387958.1/714-775 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 62
Score = 63.9 bits (32), Expect = 4e-10
Identities = 50/55 (90%), Gaps = 2/55 (3%)
Strand = Plus / Minus
Query: 39 gttatctagctttatgaagac--caatacactcatacagctagataaccaaagat 91
||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 55 gttatctagctttatgaagactccacaccactcatacagctagataaccaaagat 1
>RF00237;mir-9;ABIR01000787.1/71736-71795 6334:Trichinella
spiralis
Length = 60
Score = 61.9 bits (31), Expect = 2e-09
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 44 ctagctttatgaagaccaatacactcatacagctagataaccaaaga 90
|||||||||||| | || ||||||||||||||||||||||||||||
Sbjct: 48 ctagctttatgacgctcagtacactcatacagctagataaccaaaga 2
>RF00237;mir-9;AAAB01008960.1/1144939-1144878 180454:Anopheles
gambiae str. PEST
Length = 62
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 61 aatacactcatacagctagataaccaaaga 90
||||||||||||||||||||||||||||||
Sbjct: 31 aatacactcatacagctagataaccaaaga 2
>RF00237;mir-9;ABRR01432464.1/48-109 30538:Lama pacos (alpaca)
Length = 62
Score = 54.0 bits (27), Expect = 4e-07
Identities = 48/54 (88%), Gaps = 2/54 (3%)
Strand = Plus / Minus
Query: 32 actttcggttatctagctttatgaaga--ccaatacactcatacagctagataa 83
||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct: 62 actttcggttatctagctttatgaatactccacaccactcatacagctagataa 9
>RF00237;mir-9;BAAE01106217.1/407-468 8090:Oryzias latipes
(Japanese medaka)
Length = 62
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 64 acactcatacagctagataaccaaaga 90
|||||||||||||||||||||||||||
Sbjct: 28 acactcatacagctagataaccaaaga 2
>RF00237;mir-9;ABLF01047176.1/4611-4545 7029:Acyrthosiphon pisum
(pea aphid)
Length = 67
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 64 acactcatacagctagataaccaaaga 90
|||||||||||||||||||||||||||
Sbjct: 28 acactcatacagctagataaccaaaga 2
>RF00237;mir-9;ABRQ01039829.1/2882-2943 9813:Procavia capensis
(cape rock hyrax)
Length = 62
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 65 cactcatacagctagataaccaaaga 90
||||||||||||||||||||||||||
Sbjct: 27 cactcatacagctagataaccaaaga 2
>RF00237;mir-9;BAAF04047241.1/1745-1804 8090:Oryzias latipes
(Japanese medaka)
Length = 60
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 66 actcatacagctagataaccaaagat 91
||||||||||||||||||||||||||
Sbjct: 26 actcatacagctagataaccaaagat 1
>RF00237;mir-9;AAPU01011594.1/225879-225819 7230:Drosophila
mojavensis
Length = 61
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 65 cactcatacagctagataaccaaaga 90
||||||||||||||||||||||||||
Sbjct: 27 cactcatacagctagataaccaaaga 2
>RF00237;mir-9;ABJB010367147.1/2213-2272 6945:Ixodes scapularis
(black-legged tick)
Length = 60
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 65 cactcatacagctagataaccaaaga 90
||||||||||||||||||||||||||
Sbjct: 27 cactcatacagctagataaccaaaga 2
>RF00237;mir-9;CAAK05014843.1/1888-1946 7955:Danio rerio
(zebrafish)
Length = 59
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 66 actcatacagctagataaccaaaga 90
|||||||||||||||||||||||||
Sbjct: 26 actcatacagctagataaccaaaga 2
>RF00237;mir-9;AAVX01083387.1/420-360 7868:Callorhinchus milii
(ghost shark)
Length = 61
Score = 50.1 bits (25), Expect = 7e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 35 ttcggttatctagctttatgaagacc-aatacactcatacagctagataaccaaaga 90
||||||| ||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 58 ttcggttgtctagctttatgaaggtataacacactcatacagctagaaaaccaaaga 2
>RF00237;mir-9;AAJJ01000398.1/19121-19058 7070:Tribolium castaneum
(red flour beetle)
Length = 64
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 66 actcatacagctagataaccaaaga 90
|||||||||||||||||||||||||
Sbjct: 26 actcatacagctagataaccaaaga 2
>RF00237;mir-9;AAQA01000025.1/15457-15396 6279:Brugia malayi
Length = 62
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 66 actcatacagctagataaccaaag 89
||||||||||||||||||||||||
Sbjct: 26 actcatacagctagataaccaaag 3
>RF00237;mir-9;ABEP02027847.1/93613-93673 7739:Branchiostoma
floridae (Florida lancelet)
Length = 61
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 67 ctcatacagctagataaccaaaga 90
||||||||||||||||||||||||
Sbjct: 25 ctcatacagctagataaccaaaga 2
>RF00237;mir-9;AAZO01004437.1/24877-24818 121224:Pediculus humanus
corporis (human body louse)
Length = 60
Score = 48.1 bits (24), Expect = 3e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 35 ttcggttatctagctttatgaagaccaatacactcatacagctagataaccaaaga 90
|||||| || ||||||||||||| ||| | | ||||||||||||||||||||||
Sbjct: 57 ttcggtaatgtagctttatgaagttcaaaatatccatacagctagataaccaaaga 2
>RF00237;mir-9;AAST01027169.1/135-76 7240:Drosophila simulans
Length = 60
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 65 cactcatacagctagataaccaaa 88
||||||||||||||||||||||||
Sbjct: 27 cactcatacagctagataaccaaa 4
>RF00237;mir-9;ABKE01012786.1/839-779 54126:Pristionchus pacificus
Length = 61
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 68 tcatacagctagataaccaaaga 90
|||||||||||||||||||||||
Sbjct: 24 tcatacagctagataaccaaaga 2
