miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00642;mir-23;ABRQ01065900.1/2548-2621 9813:Procavia capensis
          (cape rock hyrax)
          Length = 74

 Score =  137 bits (69), Expect = 2e-32
 Identities = 72/73 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggccggctggggttcctggggatgggatttgctgcctgtcacaaatcacattgccaggga 60
          ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  ggccggcgggggttcctggggatgggatttgctgcctgtcacaaatcacattgccaggga 61

                       
Query: 61 tttccaaccgacc 73
          |||||||||||||
Sbjct: 62 tttccaaccgacc 74




>RF00642;mir-23;ABRO01400204.1/368-441 10020:Dipodomys ordii
          (Ord's kangaroo rat)
          Length = 74

 Score = 83.8 bits (42), Expect = 3e-16
 Identities = 67/74 (90%), Gaps = 1/74 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggccggctggggttcctggggatgggatttgctgcctg-tcacaaatcacattgccaggg 59
          |||| ||||||||||||||||||||||||||| ||    |||||||||||||||||||||
Sbjct: 1  ggccagctggggttcctggggatgggatttgcagctaaatcacaaatcacattgccaggg 60

                        
Query: 60 atttccaaccgacc 73
          ||||||||| ||||
Sbjct: 61 atttccaactgacc 74




>RF00642;mir-23;AANN01357153.1/1425-1351 9365:Erinaceus europaeus
          (western European hedgehog)
          Length = 75

 Score = 69.9 bits (35), Expect = 4e-12
 Identities = 60/67 (89%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggctggggttcctggggatgggatttgctgcct-gtcacaaatcacattgccagggattt 63
          |||||||||||||||||||| |||||| |   | ||||||||||||||||||||||||| 
Sbjct: 6  ggctggggttcctggggatgagatttgttttttagtcacaaatcacattgccagggatta 65

                 
Query: 64 ccaaccg 70
          |||||||
Sbjct: 66 ccaaccg 72




>RF00642;mir-23;AAPY01721327.1/893-821 37347:Tupaia belangeri
          (northern tree shrew)
          Length = 73

 Score = 69.9 bits (35), Expect = 4e-12
 Identities = 60/67 (89%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                      
Query: 7  ctggggttcctggggatgggatttgctgcctgtcacaaatcacattgccagggatttcca 66
          |||||| |||||||||||||||| ||||||| | | ||||||||||||||| ||||||||
Sbjct: 8  ctggggctcctggggatgggatt-gctgccttttataaatcacattgccagagatttcca 66

                 
Query: 67 accgacc 73
          || ||||
Sbjct: 67 actgacc 73




>RF00642;mir-23;AAPE01122109.1/1173-1243 59463:Myotis lucifugus
          (little brown bat)
          Length = 71

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 57/62 (91%), Gaps = 3/62 (4%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggccggctggggttcctggggatgggattt-gctgcc-tgtcacaaatcacattgccagg 58
          ||||||||||||| |||||||||||||||| |||||| |||||||| || ||||||||||
Sbjct: 2  ggccggctggggt-cctggggatgggattttgctgccctgtcacaattcgcattgccagg 60

            
Query: 59 ga 60
          ||
Sbjct: 61 ga 62




>RF00642;mir-23;BX664751.9/59056-58982 7955:Danio rerio
          (zebrafish)
          Length = 75

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 43 aaatcacattgccagggatttccaacc 69
          |||||||||||||||||||||||||||
Sbjct: 45 aaatcacattgccagggatttccaacc 71




>RF00642;mir-23;AANH01005378.1/81475-81399 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 77

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 43 aaatcacattgccagggatttccaacc 69
          |||||||||||||||||||||||||||
Sbjct: 47 aaatcacattgccagggatttccaacc 73




>RF00642;mir-23;BAAE01159439.1/298-222 8090:Oryzias latipes
          (Japanese medaka)
          Length = 77

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 43 aaatcacattgccagggatttccaacc 69
          |||||||||||||||||||||||||||
Sbjct: 47 aaatcacattgccagggatttccaacc 73




>RF00642;mir-23;AAPN01322484.1/282-356 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 75

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 43 aaatcacattgccagggatttccaac 68
          ||||||||||||||||||||||||||
Sbjct: 45 aaatcacattgccagggatttccaac 70




>RF00642;mir-23;AAWZ01000886.1/16013-15939 28377:Anolis
          carolinensis (green anole)
          Length = 75

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 44 aatcacattgccagggatttccaacc 69
          ||||||||||||||||||||||||||
Sbjct: 46 aatcacattgccagggatttccaacc 71




>RF00642;mir-23;BX908735.10/1674-1753 7955:Danio rerio (zebrafish)
          Length = 80

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 43 aaatcacattgccagggatttcca 66
          ||||||||||||||||||||||||
Sbjct: 50 aaatcacattgccagggatttcca 73




>RF00642;mir-23;CAAB01001656.1/44110-44031 31033:Takifugu rubripes
          Length = 80

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 43 aaatcacattgccagggatttcca 66
          ||||||||||||||||||||||||
Sbjct: 50 aaatcacattgccagggatttcca 73




>RF00642;mir-23;ABPM01028978.1/952-875 106582:Maylandia zebra
          (zebra mbuna)
          Length = 78

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 44 aatcacattgccagggatttccaa 67
          ||||||||||||||||||||||||
Sbjct: 49 aatcacattgccagggatttccaa 72




>RF00642;mir-23;AANH01003598.1/90472-90550 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 79

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 43 aaatcacattgccagggatttcca 66
          ||||||||||||||||||||||||
Sbjct: 49 aaatcacattgccagggatttcca 72




>RF00642;mir-23;BAAF04082680.1/5350-5271 8090:Oryzias latipes
          (Japanese medaka)
          Length = 80

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 43 aaatcacattgccagggatttcca 66
          ||||||||||||||||||||||||
Sbjct: 50 aaatcacattgccagggatttcca 73




>RF00642;mir-23;BAAE01102385.1/318-394 8090:Oryzias latipes
          (Japanese medaka)
          Length = 77

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 44 aatcacattgccagggatttccaa 67
          ||||||||||||||||||||||||
Sbjct: 48 aatcacattgccagggatttccaa 71




>RF00642;mir-23;AAVX01508943.1/286-212 7868:Callorhinchus milii
          (ghost shark)
          Length = 75

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 43 aaatcacattgccagggatttccaacc 69
          |||||||||||||||||||| ||||||
Sbjct: 45 aaatcacattgccagggattaccaacc 71