miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00642;mir-23;ABRQ01065900.1/2548-2621 9813:Procavia capensis
(cape rock hyrax)
Length = 74
Score = 137 bits (69), Expect = 2e-32
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 1 ggccggctggggttcctggggatgggatttgctgcctgtcacaaatcacattgccaggga 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ggccggcgggggttcctggggatgggatttgctgcctgtcacaaatcacattgccaggga 61
Query: 61 tttccaaccgacc 73
|||||||||||||
Sbjct: 62 tttccaaccgacc 74
>RF00642;mir-23;ABRO01400204.1/368-441 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 74
Score = 83.8 bits (42), Expect = 3e-16
Identities = 67/74 (90%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 ggccggctggggttcctggggatgggatttgctgcctg-tcacaaatcacattgccaggg 59
|||| ||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1 ggccagctggggttcctggggatgggatttgcagctaaatcacaaatcacattgccaggg 60
Query: 60 atttccaaccgacc 73
||||||||| ||||
Sbjct: 61 atttccaactgacc 74
>RF00642;mir-23;AANN01357153.1/1425-1351 9365:Erinaceus europaeus
(western European hedgehog)
Length = 75
Score = 69.9 bits (35), Expect = 4e-12
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 5 ggctggggttcctggggatgggatttgctgcct-gtcacaaatcacattgccagggattt 63
|||||||||||||||||||| |||||| | | |||||||||||||||||||||||||
Sbjct: 6 ggctggggttcctggggatgagatttgttttttagtcacaaatcacattgccagggatta 65
Query: 64 ccaaccg 70
|||||||
Sbjct: 66 ccaaccg 72
>RF00642;mir-23;AAPY01721327.1/893-821 37347:Tupaia belangeri
(northern tree shrew)
Length = 73
Score = 69.9 bits (35), Expect = 4e-12
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 7 ctggggttcctggggatgggatttgctgcctgtcacaaatcacattgccagggatttcca 66
|||||| |||||||||||||||| ||||||| | | ||||||||||||||| ||||||||
Sbjct: 8 ctggggctcctggggatgggatt-gctgccttttataaatcacattgccagagatttcca 66
Query: 67 accgacc 73
|| ||||
Sbjct: 67 actgacc 73
>RF00642;mir-23;AAPE01122109.1/1173-1243 59463:Myotis lucifugus
(little brown bat)
Length = 71
Score = 60.0 bits (30), Expect = 4e-09
Identities = 57/62 (91%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 1 ggccggctggggttcctggggatgggattt-gctgcc-tgtcacaaatcacattgccagg 58
||||||||||||| |||||||||||||||| |||||| |||||||| || ||||||||||
Sbjct: 2 ggccggctggggt-cctggggatgggattttgctgccctgtcacaattcgcattgccagg 60
Query: 59 ga 60
||
Sbjct: 61 ga 62
>RF00642;mir-23;BX664751.9/59056-58982 7955:Danio rerio
(zebrafish)
Length = 75
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatttccaacc 69
|||||||||||||||||||||||||||
Sbjct: 45 aaatcacattgccagggatttccaacc 71
>RF00642;mir-23;AANH01005378.1/81475-81399 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatttccaacc 69
|||||||||||||||||||||||||||
Sbjct: 47 aaatcacattgccagggatttccaacc 73
>RF00642;mir-23;BAAE01159439.1/298-222 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatttccaacc 69
|||||||||||||||||||||||||||
Sbjct: 47 aaatcacattgccagggatttccaacc 73
>RF00642;mir-23;AAPN01322484.1/282-356 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatttccaac 68
||||||||||||||||||||||||||
Sbjct: 45 aaatcacattgccagggatttccaac 70
>RF00642;mir-23;AAWZ01000886.1/16013-15939 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 44 aatcacattgccagggatttccaacc 69
||||||||||||||||||||||||||
Sbjct: 46 aatcacattgccagggatttccaacc 71
>RF00642;mir-23;BX908735.10/1674-1753 7955:Danio rerio (zebrafish)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatttcca 66
||||||||||||||||||||||||
Sbjct: 50 aaatcacattgccagggatttcca 73
>RF00642;mir-23;CAAB01001656.1/44110-44031 31033:Takifugu rubripes
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatttcca 66
||||||||||||||||||||||||
Sbjct: 50 aaatcacattgccagggatttcca 73
>RF00642;mir-23;ABPM01028978.1/952-875 106582:Maylandia zebra
(zebra mbuna)
Length = 78
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 aatcacattgccagggatttccaa 67
||||||||||||||||||||||||
Sbjct: 49 aatcacattgccagggatttccaa 72
>RF00642;mir-23;AANH01003598.1/90472-90550 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatttcca 66
||||||||||||||||||||||||
Sbjct: 49 aaatcacattgccagggatttcca 72
>RF00642;mir-23;BAAF04082680.1/5350-5271 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatttcca 66
||||||||||||||||||||||||
Sbjct: 50 aaatcacattgccagggatttcca 73
>RF00642;mir-23;BAAE01102385.1/318-394 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 aatcacattgccagggatttccaa 67
||||||||||||||||||||||||
Sbjct: 48 aatcacattgccagggatttccaa 71
>RF00642;mir-23;AAVX01508943.1/286-212 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatttccaacc 69
|||||||||||||||||||| ||||||
Sbjct: 45 aaatcacattgccagggattaccaacc 71
