miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00642;mir-23;AADN02067827.1/5868-5942 9031:Gallus gallus
(chicken)
Length = 75
Score = 103 bits (52), Expect = 2e-22
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 1 gggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattaccac 60
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 10 gggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagggattaccac 69
>RF00642;mir-23;AAPN01152921.1/1403-1329 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 95.6 bits (48), Expect = 5e-20
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 1 gggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattaccac 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 10 gggttcctggcatgctgatttgtgacttaagagaaaaatcacattgccagggataaccac 69
>RF00642;mir-23;AAVX01114775.1/823-749 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 95.6 bits (48), Expect = 5e-20
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 1 gggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattaccac 60
|||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct: 10 gggttcctggcatgctgatttgtgacatgagataaaaatcacattgccagggattaccac 69
>RF00642;mir-23;AAYZ01075783.1/3205-3279 9978:Ochotona princeps
(American pika)
Length = 75
Score = 89.7 bits (45), Expect = 3e-18
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 4 ttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattaccac 60
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 13 ttcctggcatgctgatttgtgacttcagattaaaacgacattgccagggattaccac 69
>RF00642;mir-23;BAAE01089507.1/636-563 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 87.7 bits (44), Expect = 1e-17
Identities = 57/60 (95%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 1 gggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattaccac 60
||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 10 gggttcctggcgtgctgatttgtgacttatgat-aaaatcacattgccagggattaccac 68
>RF00642;mir-23;AAPY01550614.1/2244-2174 37347:Tupaia belangeri
(northern tree shrew)
Length = 71
Score = 75.8 bits (38), Expect = 5e-14
Identities = 56/60 (93%), Gaps = 4/60 (6%)
Strand = Plus / Plus
Query: 1 gggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattaccac 60
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 10 gggttcctggcatgctgatttgtgact--agat--aaatcacattgccagggattaccac 65
>RF00642;mir-23;CT027840.6/2697-2774 7955:Danio rerio (zebrafish)
Length = 78
Score = 58.0 bits (29), Expect = 1e-08
Identities = 55/63 (87%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 1 gggttcctggcatgctgatttgtgacttaag---attaaaatcacattgccagggattac 57
|||||| |||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct: 10 gggttcttggcatgctgatttgtgactgtagtaaaaaaaaatcacattgccagggattac 69
Query: 58 cac 60
|||
Sbjct: 70 cac 72
>RF00642;mir-23;AAVX01508943.1/286-212 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 52.0 bits (26), Expect = 7e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 34 taaaatcacattgccagggattacca 59
||||||||||||||||||||||||||
Sbjct: 43 taaaatcacattgccagggattacca 68
>RF00642;mir-23;AANN01357153.1/1425-1351 9365:Erinaceus europaeus
(western European hedgehog)
Length = 75
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 aaatcacattgccagggattacca 59
||||||||||||||||||||||||
Sbjct: 45 aaatcacattgccagggattacca 68
>RF00642;mir-23;BX908735.10/1674-1753 7955:Danio rerio (zebrafish)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 35 aaaatcacattgccagggattaccac 60
||||||||||||||||||||| ||||
Sbjct: 49 aaaatcacattgccagggatttccac 74
>RF00642;mir-23;BX664751.9/59056-58982 7955:Danio rerio
(zebrafish)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 34 taaaatcacattgccagggatt 55
||||||||||||||||||||||
Sbjct: 43 taaaatcacattgccagggatt 64
>RF00642;mir-23;CAAB01001656.1/44110-44031 31033:Takifugu rubripes
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 35 aaaatcacattgccagggattaccac 60
||||||||||||||||||||| ||||
Sbjct: 49 aaaatcacattgccagggatttccac 74
>RF00642;mir-23;AANH01003598.1/90472-90550 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 35 aaaatcacattgccagggattaccac 60
||||||||||||||||||||| ||||
Sbjct: 48 aaaatcacattgccagggatttccac 73
>RF00642;mir-23;BAAF04082680.1/5350-5271 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 35 aaaatcacattgccagggattaccac 60
||||||||||||||||||||| ||||
Sbjct: 49 aaaatcacattgccagggatttccac 74
>RF00642;mir-23;AAPN01322484.1/282-356 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 35 aaaatcacattgccagggatt 55
|||||||||||||||||||||
Sbjct: 44 aaaatcacattgccagggatt 64
