miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00074;mir-29;ABRR01582801.1/1311-1240 30538:Lama pacos (alpaca)
Length = 72
Score = 119 bits (60), Expect = 6e-27
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 5 tggaagctggtttcacatggtggcttagatttttccatctttgtatctagcaccatttga 64
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 tggaagctggtttcacatggcggcttagattttttcatctttgtatctagcaccatttga 60
Query: 65 aatcagtgtttt 76
||||| ||||||
Sbjct: 61 aatcaatgtttt 72
>RF00074;mir-29;AADN02044957.1/1768-1698 9031:Gallus gallus
(chicken)
Length = 71
Score = 115 bits (58), Expect = 9e-26
Identities = 68/70 (97%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 5 tggaagctggtttcacatggtggcttagatttttccatctttgtatctagcaccatttga 64
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 tggaagctggtttcacatggtggcttagattttccca-ctttgtatctagcaccatttga 59
Query: 65 aatcagtgtt 74
||||||||||
Sbjct: 60 aatcagtgtt 69
>RF00074;mir-29;AANN01104186.1/394-465 9365:Erinaceus europaeus
(western European hedgehog)
Length = 72
Score = 95.6 bits (48), Expect = 8e-20
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 5 tggaagctggtttcacatggtggcttagatttttccatctttgtatctagcaccatttga 64
|||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||
Sbjct: 1 tggaagctggtttcacatggtgccttagatttccccatcgcagtatctagcaccatttga 60
Query: 65 aatcagtgtttt 76
||||||||||||
Sbjct: 61 aatcagtgtttt 72
>RF00074;mir-29;AAVX01078214.1/596-525 7868:Callorhinchus milii
(ghost shark)
Length = 72
Score = 60.0 bits (30), Expect = 4e-09
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 5 tggaagctggtttcacatggtggcttagatttttccatctttgtatctagcaccatttga 64
||||||||||||||| |||||| |||||||| | ||| || |||||||||||||||
Sbjct: 1 tggaagctggtttcatatggtgtcttagattgtaccagtgctgactctagcaccatttga 60
Query: 65 aatcagtgtt 74
||||||||||
Sbjct: 61 aatcagtgtt 70
>RF00074;mir-29;AADN02039691.1/13652-13582 9031:Gallus gallus
(chicken)
Length = 71
Score = 54.0 bits (27), Expect = 3e-07
Identities = 61/70 (87%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 6 ggaagctggtttcacatggtggcttagatttttccat-ctttgtatctagcaccatttga 64
|||||||||||||| ||||||| |||||||| | || | |||| ||||||||||||||
Sbjct: 2 ggaagctggtttcatatggtggtttagatttaactattcattgt--ctagcaccatttga 59
Query: 65 aatcagtgtt 74
||||||||||
Sbjct: 60 aatcagtgtt 69
>RF00074;mir-29;BAAE01168881.1/2069-2001 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 48 tatctagcaccatttgaaatcagtgtt 74
|||||||||||||||||||||||||||
Sbjct: 41 tatctagcaccatttgaaatcagtgtt 67
>RF00074;mir-29;CAAK05057292.1/12337-12269 7955:Danio rerio
(zebrafish)
Length = 69
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 atctagcaccatttgaaatcagtgtt 74
||||||||||||||||||||||||||
Sbjct: 42 atctagcaccatttgaaatcagtgtt 67
>RF00074;mir-29;BX001041.6/159008-158937 7955:Danio rerio
(zebrafish)
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 atctagcaccatttgaaatcagtgtt 74
||||||||||||||||||||||||||
Sbjct: 45 atctagcaccatttgaaatcagtgtt 70
>RF00074;mir-29;BX465862.7/161280-161350 7955:Danio rerio
(zebrafish)
Length = 71
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tctagcaccatttgaaatcagtgtt 74
|||||||||||||||||||||||||
Sbjct: 45 tctagcaccatttgaaatcagtgtt 69
>RF00074;mir-29;CAAE01013715.1/7308-7378 99883:Tetraodon
nigroviridis
Length = 71
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tctagcaccatttgaaatcagtgtt 74
|||||||||||||||||||||||||
Sbjct: 45 tctagcaccatttgaaatcagtgtt 69
>RF00074;mir-29;BAAE01022609.1/1375-1305 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tctagcaccatttgaaatcagtgtt 74
|||||||||||||||||||||||||
Sbjct: 45 tctagcaccatttgaaatcagtgtt 69
>RF00074;mir-29;AAVX01119247.1/689-758 7868:Callorhinchus milii
(ghost shark)
Length = 70
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tctagcaccatttgaaatcagtgtt 74
|||||||||||||||||||||||||
Sbjct: 44 tctagcaccatttgaaatcagtgtt 68
>RF00074;mir-29;CAAB01000294.1/99403-99473 31033:Takifugu rubripes
Length = 71
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 45 ttgtatctagcaccatttgaaatcagtgtttt 76
|||| ||||||||||| |||||||||||||||
Sbjct: 40 ttgtctctagcaccatgtgaaatcagtgtttt 71
>RF00074;mir-29;CAAB01004459.1/12967-12899 31033:Takifugu rubripes
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 atctagcaccatttgaaatcagtgtt 74
|||||||||||||||||||| |||||
Sbjct: 42 atctagcaccatttgaaatcggtgtt 67
>RF00074;mir-29;BAAF04011924.1/258-326 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 atctagcaccatttgaaatcagtgtt 74
|||||||||||||||||||| |||||
Sbjct: 42 atctagcaccatttgaaatcggtgtt 67
