miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00074;mir-29;ABRR01582801.1/1311-1240 30538:Lama pacos (alpaca)
Length = 72
Score = 111 bits (56), Expect = 1e-24
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 5 tggaagctggtttcacatggtggcttagatttttccatctttgtatctagcatcatttga 64
|||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||
Sbjct: 1 tggaagctggtttcacatggcggcttagattttttcatctttgtatctagcaccatttga 60
Query: 65 aatcagtgtttt 76
||||| ||||||
Sbjct: 61 aatcaatgtttt 72
>RF00074;mir-29;AADN02044957.1/1768-1698 9031:Gallus gallus
(chicken)
Length = 71
Score = 107 bits (54), Expect = 2e-23
Identities = 67/70 (95%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 5 tggaagctggtttcacatggtggcttagatttttccatctttgtatctagcatcatttga 64
||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||
Sbjct: 1 tggaagctggtttcacatggtggcttagattttccca-ctttgtatctagcaccatttga 59
Query: 65 aatcagtgtt 74
||||||||||
Sbjct: 60 aatcagtgtt 69
>RF00074;mir-29;AANN01104186.1/394-465 9365:Erinaceus europaeus
(western European hedgehog)
Length = 72
Score = 87.7 bits (44), Expect = 2e-17
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 5 tggaagctggtttcacatggtggcttagatttttccatctttgtatctagcatcatttga 64
|||||||||||||||||||||| ||||||||| ||||| |||||||||| |||||||
Sbjct: 1 tggaagctggtttcacatggtgccttagatttccccatcgcagtatctagcaccatttga 60
Query: 65 aatcagtgtttt 76
||||||||||||
Sbjct: 61 aatcagtgtttt 72
>RF00074;mir-29;AAVX01078214.1/596-525 7868:Callorhinchus milii
(ghost shark)
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 5 tggaagctggtttcacatggtggcttagatttttccatctttgtatctagcatcatttga 64
||||||||||||||| |||||| |||||||| | ||| || ||||||| |||||||
Sbjct: 1 tggaagctggtttcatatggtgtcttagattgtaccagtgctgactctagcaccatttga 60
Query: 65 aatcagtgtt 74
||||||||||
Sbjct: 61 aatcagtgtt 70
>RF00074;mir-29;BAAE01168881.1/2069-2001 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 tggaagctggtttcacatggtggcttaga 33
||||||||||||||| |||||||||||||
Sbjct: 1 tggaagctggtttcagatggtggcttaga 29
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tatctagcatcatttgaaatcagtgtt 74
||||||||| |||||||||||||||||
Sbjct: 41 tatctagcaccatttgaaatcagtgtt 67
>RF00074;mir-29;AADN02039691.1/13652-13582 9031:Gallus gallus
(chicken)
Length = 71
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 ggaagctggtttcacatggtggcttagattt 36
|||||||||||||| ||||||| ||||||||
Sbjct: 2 ggaagctggtttcatatggtggtttagattt 32
>RF00074;mir-29;CAAK05057292.1/12337-12269 7955:Danio rerio
(zebrafish)
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 atctagcatcatttgaaatcagtgtt 74
|||||||| |||||||||||||||||
Sbjct: 42 atctagcaccatttgaaatcagtgtt 67
>RF00074;mir-29;BX001041.6/159008-158937 7955:Danio rerio
(zebrafish)
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 atctagcatcatttgaaatcagtgtt 74
|||||||| |||||||||||||||||
Sbjct: 45 atctagcaccatttgaaatcagtgtt 70
