miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00131;mir-30;ABRQ01009475.1/3495-3435 9813:Procavia capensis
          (cape rock hyrax)
          Length = 61

 Score = 81.8 bits (41), Expect = 9e-16
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                      
Query: 2  tgtaaacatcctcgactggaagctgtgaggctgcagaaaggctttcagtcggatgtttgc 61
          |||||||||||||||||||||||||||| ||  ||||  |||||||||||||||||||||
Sbjct: 1  tgtaaacatcctcgactggaagctgtgaagccacagatgggctttcagtcggatgtttgc 60

           
Query: 62 a 62
          |
Sbjct: 61 a 61




>RF00131;mir-30;AADN02002528.1/88445-88506 9031:Gallus gallus
          (chicken)
          Length = 62

 Score = 75.8 bits (38), Expect = 6e-14
 Identities = 57/62 (91%), Gaps = 1/62 (1%)
 Strand = Plus / Plus

                                                                      
Query: 2  tgtaaacatcctcgactggaagctgtgaggctgcaga-aaggctttcagtcggatgtttg 60
          |||||||||||||||||||||||||||| || |||||   ||||||||||||||||||||
Sbjct: 1  tgtaaacatcctcgactggaagctgtgaagcagcagatggggctttcagtcggatgtttg 60

            
Query: 61 ca 62
          ||
Sbjct: 61 ca 62




>RF00131;mir-30;AAVX01474940.1/155-214 7868:Callorhinchus milii
          (ghost shark)
          Length = 60

 Score = 65.9 bits (33), Expect = 6e-11
 Identities = 55/61 (90%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                      
Query: 2  tgtaaacatcctcgactggaagctgtgaggctgcagaaaggctttcagtcggatgtttgc 61
          ||||||||||||||||||||||||||||||  ||  |  |||||||||||||||||||||
Sbjct: 1  tgtaaacatcctcgactggaagctgtgagg-ggccaatgggctttcagtcggatgtttgc 59

           
Query: 62 a 62
          |
Sbjct: 60 a 60




>RF00131;mir-30;ABRT010169987.1/2049-1991 9478:Tarsius syrichta
          (Philippine tarsier)
          Length = 59

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 2  tgtaaacatcctcgactggaagctgtg 28
          |||||||||||||||||||||||||||
Sbjct: 1  tgtaaacatcctcgactggaagctgtg 27




>RF00131;mir-30;AADN02043797.1/10718-10657 9031:Gallus gallus
          (chicken)
          Length = 62

 Score = 52.0 bits (26), Expect = 8e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 2  tgtaaacatcctcgactggaagctgtgagg 31
          |||||||||||| |||||||||||||||||
Sbjct: 1  tgtaaacatccttgactggaagctgtgagg 30




>RF00131;mir-30;AAWZ01013131.1/23739-23678 28377:Anolis
          carolinensis (green anole)
          Length = 62

 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 53/60 (88%), Gaps = 3/60 (5%)
 Strand = Plus / Plus

                                                                      
Query: 2  tgtaaacatcctcgactggaagctgtg--aggctgcagaaaggctttcagtcggatgttt 59
          |||||||||||| ||||||||||||||  ||||| || |  |||||||||||||||||||
Sbjct: 1  tgtaaacatccttgactggaagctgtgcaaggct-caaaggggctttcagtcggatgttt 59




>RF00131;mir-30;BX323874.4/7995-7933 7955:Danio rerio (zebrafish)
          Length = 63

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 2  tgtaaacatcctcgactggaagctgtg 28
          ||||||||||| |||||||||||||||
Sbjct: 1  tgtaaacatccccgactggaagctgtg 27




>RF00131;mir-30;AANH01002293.1/5342-5405 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 64

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 2  tgtaaacatcctcgactggaagctgtg 28
          |||||||||||| ||||||||||||||
Sbjct: 1  tgtaaacatccttgactggaagctgtg 27



 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 41 ggctttcagtcggatgtttgca 62
          ||||||||||||||||||||||
Sbjct: 43 ggctttcagtcggatgtttgca 64




>RF00131;mir-30;BAAF04077266.1/8695-8638 8090:Oryzias latipes
          (Japanese medaka)
          Length = 58

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 2  tgtaaacatcctcgactggaagctgtg 28
          ||||||||||| |||||||||||||||
Sbjct: 1  tgtaaacatccccgactggaagctgtg 27




>RF00131;mir-30;AAPN01319291.1/18051-18110 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 60

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 2  tgtaaacatcctcgactggaagctgt 27
          ||||||||||| ||||||||||||||
Sbjct: 1  tgtaaacatccccgactggaagctgt 26




>RF00131;mir-30;AAKN02055704.1/76333-76394 10141:Cavia porcellus
          (domestic guinea pig)
          Length = 62

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 2  tgtaaacatcctcgactggaagctgt 27
          |||||||||||| |||||||||||||
Sbjct: 1  tgtaaacatccttgactggaagctgt 26




>RF00131;mir-30;AAYZ01122954.1/1089-1030 9978:Ochotona princeps
          (American pika)
          Length = 60

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 2  tgtaaacatcctcgactggaagctgt 27
          ||||||||||| ||||||||||||||
Sbjct: 1  tgtaaacatccccgactggaagctgt 26




>RF00131;mir-30;ABRQ01189397.1/6501-6442 9813:Procavia capensis
          (cape rock hyrax)
          Length = 60

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 2  tgtaaacatcctcgactggaagctgt 27
          ||||||||||| ||||||||||||||
Sbjct: 1  tgtaaacatccccgactggaagctgt 26




>RF00131;mir-30;ABQF01032194.1/21176-21232 59729:Taeniopygia
          guttata
          Length = 57

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 2  tgtaaacatcctcgactggaagctgt 27
          ||||||||||| ||||||||||||||
Sbjct: 1  tgtaaacatccccgactggaagctgt 26




>RF00131;mir-30;AADN02022374.1/21255-21311 9031:Gallus gallus
          (chicken)
          Length = 57

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 2  tgtaaacatcctcgactggaagctgt 27
          ||||||||||| ||||||||||||||
Sbjct: 1  tgtaaacatccccgactggaagctgt 26




>RF00131;mir-30;CAAB01000020.1/215834-215777 31033:Takifugu
          rubripes
          Length = 58

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 2  tgtaaacatcctcgactggaagctgt 27
          ||||||||||| ||||||||||||||
Sbjct: 1  tgtaaacatccccgactggaagctgt 26




>RF00131;mir-30;AANH01002465.1/73021-72964 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 58

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 2  tgtaaacatcctcgactggaagctgt 27
          ||||||||||| ||||||||||||||
Sbjct: 1  tgtaaacatccccgactggaagctgt 26




>RF00131;mir-30;BAAF04002319.1/6281-6343 8090:Oryzias latipes
          (Japanese medaka)
          Length = 63

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 41 ggctttcagtcggatgtttgca 62
          ||||||||||||||||||||||
Sbjct: 42 ggctttcagtcggatgtttgca 63



 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 2  tgtaaacatcctcgactggaagctg 26
          |||||||||||| ||||||||||||
Sbjct: 1  tgtaaacatccttgactggaagctg 25




>RF00131;mir-30;BAAF04079177.1/18181-18241 8090:Oryzias latipes
          (Japanese medaka)
          Length = 61

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 41 ggctttcagtcggatgtttgca 62
          ||||||||||||||||||||||
Sbjct: 40 ggctttcagtcggatgtttgca 61



 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 2  tgtaaacatcctcgactggaagctg 26
          |||||||||||| ||||||||||||
Sbjct: 1  tgtaaacatccttgactggaagctg 25




>RF00131;mir-30;AAVX01365666.1/262-201 7868:Callorhinchus milii
          (ghost shark)
          Length = 62

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 2  tgtaaacatcctcgactggaagctgt 27
          ||||||||||| ||||||||||||||
Sbjct: 1  tgtaaacatccccgactggaagctgt 26




>RF00131;mir-30;ABQF01061949.1/5737-5797 59729:Taeniopygia guttata
          Length = 61

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 2  tgtaaacatcctcgactggaagctg 26
          |||||||||||| ||||||||||||
Sbjct: 1  tgtaaacatccttgactggaagctg 25




>RF00131;mir-30;CR356236.12/41533-41474 7955:Danio rerio
          (zebrafish)
          Length = 60

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 2  tgtaaacatcctcgactggaagctg 26
          |||||||||||| ||||||||||||
Sbjct: 1  tgtaaacatccttgactggaagctg 25



 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 gctttcagtcggatgtttgca 62
          |||||||||||||||||||||
Sbjct: 40 gctttcagtcggatgtttgca 60




>RF00131;mir-30;CAAB01000598.1/36787-36849 31033:Takifugu rubripes
          Length = 63

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 2  tgtaaacatcctcgactggaagctg 26
          |||||||||||| ||||||||||||
Sbjct: 1  tgtaaacatccttgactggaagctg 25



 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 39 aaggctttcagtcggatgttt 59
          |||||||||||||||||||||
Sbjct: 40 aaggctttcagtcggatgttt 60