miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00131;mir-30;AAKN02055704.1/76333-76394 10141:Cavia porcellus
(domestic guinea pig)
Length = 62
Score = 83.8 bits (42), Expect = 4e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 17 tgtaaacatccttgactggaagctgtaaggcgttgcaaggagctttcagtcggatgttta 76
|||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgtaaagtgttcagaggagctttcagtcggatgttta 60
Query: 77 ca 78
||
Sbjct: 61 ca 62
>RF00131;mir-30;ABQF01061949.1/5737-5797 59729:Taeniopygia guttata
Length = 61
Score = 83.8 bits (42), Expect = 4e-16
Identities = 58/62 (93%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 17 tgtaaacatccttgactggaagctgtaaggcgttgcaaggagctttcagtcggatgttta 76
||||||||||||||||||||||||| |||| | || ||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctggaagg-gctggaaggagctttcagtcggatgttta 59
Query: 77 ca 78
||
Sbjct: 60 ca 61
>RF00131;mir-30;AAWZ01013131.1/23739-23678 28377:Anolis
carolinensis (green anole)
Length = 62
Score = 60.0 bits (30), Expect = 5e-09
Identities = 57/64 (89%), Gaps = 4/64 (6%)
Strand = Plus / Plus
Query: 17 tgtaaacatccttgactggaagctgt--aaggcgttgcaaggagctttcagtcggatgtt 74
|||||||||||||||||||||||||| ||||| | |||| |||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgtgcaaggc--tcaaaggggctttcagtcggatgtt 58
Query: 75 taca 78
||||
Sbjct: 59 taca 62
>RF00131;mir-30;AADN02043797.1/10718-10657 9031:Gallus gallus
(chicken)
Length = 62
Score = 60.0 bits (30), Expect = 5e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 17 tgtaaacatccttgactggaagctgtaaggcgttgcaaggagctttcagtcggatgttta 76
|||||||||||||||||||||||||| ||| || || |||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgtgaggtgtcagcgggggctttcagtcggatgttta 60
Query: 77 ca 78
||
Sbjct: 61 ca 62
>RF00131;mir-30;AANH01002293.1/5342-5405 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 64
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 17 tgtaaacatccttgactggaagctgt 42
||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgt 26
>RF00131;mir-30;CR356236.12/41533-41474 7955:Danio rerio
(zebrafish)
Length = 60
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 tgtaaacatccttgactggaagctg 41
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
>RF00131;mir-30;CAAB01000598.1/36787-36849 31033:Takifugu rubripes
Length = 63
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 tgtaaacatccttgactggaagctg 41
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
>RF00131;mir-30;BAAF04002319.1/6281-6343 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 tgtaaacatccttgactggaagctg 41
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
>RF00131;mir-30;BAAF04079177.1/18181-18241 8090:Oryzias latipes
(Japanese medaka)
Length = 61
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 tgtaaacatccttgactggaagctg 41
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
>RF00131;mir-30;AAVX01474940.1/155-214 7868:Callorhinchus milii
(ghost shark)
Length = 60
Score = 48.1 bits (24), Expect = 2e-05
Identities = 51/59 (86%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 17 tgtaaacatccttgactggaagctgtaaggcgttgcaaggagctttcagtcggatgttt 75
|||||||||||| ||||||||||||| ||| | ||| | ||||||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgtgagggg--ccaatgggctttcagtcggatgttt 57
>RF00131;mir-30;ABRT010169987.1/2049-1991 9478:Tarsius syrichta
(Philippine tarsier)
Length = 59
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 tgtaaacatccttgactggaagctgt 42
|||||||||||| |||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgt 26
>RF00131;mir-30;ABRQ01009475.1/3495-3435 9813:Procavia capensis
(cape rock hyrax)
Length = 61
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 tgtaaacatccttgactggaagctgt 42
|||||||||||| |||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgt 26
>RF00131;mir-30;AADN02002528.1/88445-88506 9031:Gallus gallus
(chicken)
Length = 62
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 tgtaaacatccttgactggaagctgt 42
|||||||||||| |||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgt 26
