miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00131;mir-30;AADN02002528.1/113060-113119 9031:Gallus gallus
(chicken)
Length = 60
Score = 79.8 bits (40), Expect = 5e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggctgtttact 73
|||||||| |||||||||||||||||| | | | ||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
>RF00131;mir-30;ABRQ01022295.1/2169-2111 9813:Procavia capensis
(cape rock hyrax)
Length = 59
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtg 40
|||||||| ||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>RF00131;mir-30;AAWZ01013131.1/19786-19728 28377:Anolis
carolinensis (green anole)
Length = 59
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtg 40
|||||||| ||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>RF00131;mir-30;BAAF04002319.1/6529-6586 8090:Oryzias latipes
(Japanese medaka)
Length = 58
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtg 40
|||||||| ||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>RF00131;mir-30;AAVX01018251.1/1878-1935 7868:Callorhinchus milii
(ghost shark)
Length = 58
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgtg 40
|||||||| ||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>RF00131;mir-30;AAPN01350711.1/14399-14341 9258:Ornithorhynchus
anatinus (platypus)
Length = 59
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 tgtaaacaccctacactctcagctgt 39
|||||||| |||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgt 26
