miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00667;mir-33;AAKN02045137.1/14420-14354 10141:Cavia porcellus
(domestic guinea pig)
Length = 67
Score = 103 bits (52), Expect = 4e-22
Identities = 64/67 (95%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 11 ccgcggtgcattgctgttgcattgcatgtgtg--aggcaggtgcagtgcctcggcagtgc 68
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 1 ccgcggtgcattgctgttgcattgcatgtgtgtgaggcgggtgcagtgcctcggcagtgc 60
Query: 69 agcccgg 75
|||||||
Sbjct: 61 agcccgg 67
>RF00667;mir-33;AAGU02562745.1/2088-2024 9785:Loxodonta africana
(African savanna elephant)
Length = 65
Score = 89.7 bits (45), Expect = 6e-18
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 15 ggtgcattgctgttgcattgcatgtgtgaggcaggtgcagtgcctcggcagtgcagcccg 74
|||||||||||||||||||||| ||||| ||| ||||||||||||| |||||||||||||
Sbjct: 5 ggtgcattgctgttgcattgcacgtgtgtggcgggtgcagtgcctcagcagtgcagcccg 64
Query: 75 g 75
|
Sbjct: 65 g 65
>RF00667;mir-33;AAYZ01315512.1/404-338 9978:Ochotona princeps
(American pika)
Length = 67
Score = 75.8 bits (38), Expect = 9e-14
Identities = 56/61 (91%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 17 tgcattgctgttgcattgcatgtgtgag--gcaggtgcagtgcctcggcagtgcagcccg 74
|||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct: 7 tgcattgctggtgcattgcacgtgtgcgcagcaggtgcagtgcctcggcagtgcagcccg 66
Query: 75 g 75
|
Sbjct: 67 g 67
>RF00667;mir-33;AAIY01371081.1/711-777 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 67
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/63 (90%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 15 ggtgcattgctgttgcattgca--tgtgtgaggcaggtgcagtgcctcggcagtgcagcc 72
|||||||||| ||||||||||| |||||| | |||||||||||| ||||||||||||||
Sbjct: 5 ggtgcattgcggttgcattgcacgtgtgtgcgccaggtgcagtgcttcggcagtgcagcc 64
Query: 73 cgg 75
|||
Sbjct: 65 cgg 67
>RF00667;mir-33;AAQQ01305246.1/1096-1158 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 63
Score = 69.9 bits (35), Expect = 6e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 17 tgcattgctgttgcattgcatgtgtgaggcaggtgcagtgcctcggcagtgcagcccgg 75
|||||||||| ||||||||| | ||| ||| ||||||||||||| ||||||||||||||
Sbjct: 5 tgcattgctgctgcattgcacgcgtgtggcgggtgcagtgcctcagcagtgcagcccgg 63
