miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;ABRQ01219522.1/1254-1171 9813:Procavia capensis
(cape rock hyrax)
Length = 84
Score = 127 bits (64), Expect = 2e-29
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtaattagctgattgtactctcatgcttacaatcactagt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtaattagctgattgtactctggagcttacaatcactaac 60
Query: 61 tccactgccatcaaaacaaggcac 84
||||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>RF00456;mir-34;ABQO011207158.1/502-419 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 103 bits (52), Expect = 3e-22
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtaattagctgattgtactctcatgcttacaatcactagt 60
||||||||||||||||||||||| ||||||||||||| ||| ||| | |||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtagttagctgattgtattctactgcctgcaatcactaac 60
Query: 61 tccactgccatcaaaacaaggcac 84
||||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>RF00456;mir-34;ABRO01055556.1/3019-2935 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 85
Score = 99.6 bits (50), Expect = 5e-21
Identities = 80/86 (93%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtaattagctgattgtactctc-atgc-ttacaatcacta 58
|||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtaattagctgattgtac-ctcggtgctttacaatcacta 59
Query: 59 gttccactgccatcaaaacaaggcac 84
||||||||||||||||||||||||
Sbjct: 60 actccactgccatcaaaacaaggcac 85
>RF00456;mir-34;AAPN01276489.1/6299-6216 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 79.8 bits (40), Expect = 5e-15
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtaattagctgattgtactctcatgcttacaatcactagt 60
||||||||||||||||||||||| ||||||||||| || || || |||||||||
Sbjct: 1 gtgctcggtttgtaggcagtgtagttagctgattggaccatcccgcccgcaatcactaac 60
Query: 61 tccactgccatcaaaacaaggcac 84
||||||||||||||||||||||||
Sbjct: 61 tccactgccatcaaaacaaggcac 84
>RF00456;mir-34;AADN02058045.1/6812-6729 9031:Gallus gallus
(chicken)
Length = 84
Score = 56.0 bits (28), Expect = 7e-08
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 1 gtgctcggtttgtaggcagtgtaattagctgattgtactctcatgcttacaatcactagt 60
||||| |||||| |||||||||| |||||||||||||| | | ||||||||||
Sbjct: 1 gtgcttggtttgcaggcagtgtagttagctgattgtacccagcgccccacaatcactaaa 60
Query: 61 tccactgccatcaaaacaaggcac 84
| ||||||||||||||||||||||
Sbjct: 61 ttcactgccatcaaaacaaggcac 84
>RF00456;mir-34;AAWZ01034188.1/4744-4661 28377:Anolis carolinensis
(green anole)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 ggtttgtaggcagtgtaattagctgattgt 36
||||||||||||||||| ||||||||||||
Sbjct: 7 ggtttgtaggcagtgtagttagctgattgt 36
>RF00456;mir-34;ABQF01045704.1/19863-19946 59729:Taeniopygia
guttata
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 ggtttgtaggcagtgtaattagctgattgt 36
|||||| |||||||||| ||||||||||||
Sbjct: 7 ggtttgcaggcagtgtagttagctgattgt 36
