miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00464;mir-92;ABDC01275774.1/2124-2045 30608:Microcebus murinus
          (gray mouse lemur)
          Length = 80

 Score =  119 bits (60), Expect = 4e-27
 Identities = 66/68 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgggtggggatttgttgcactgcttgtgttatatataaagtattgcacttgtcccggcct 60
          ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 10 tgggtggggatttgttgcactacttgtgttatatgtaaagtattgcacttgtcccggcct 69

                  
Query: 61 gtggaaga 68
          ||||||||
Sbjct: 70 gtggaaga 77




>RF00464;mir-92;FP015951.3/28649-28570 9823:Sus scrofa (pig)
          Length = 80

 Score = 95.6 bits (48), Expect = 6e-20
 Identities = 63/68 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgggtggggatttgttgcactgcttgtgttatatataaagtattgcacttgtcccggcct 60
          ||||||||||||||||||| | |||||| | | |||||||||||||||||||||||||||
Sbjct: 10 tgggtggggatttgttgcattacttgtggtgtgtataaagtattgcacttgtcccggcct 69

                  
Query: 61 gtggaaga 68
          ||||||||
Sbjct: 70 gtggaaga 77




>RF00464;mir-92;AAHY01210291.1/5443-5364 10090:Mus musculus (house
          mouse)
          Length = 80

 Score = 83.8 bits (42), Expect = 2e-16
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                      
Query: 3  ggtggggatttgttgcactgcttgtgttatatataaagtattgcacttgtcccggcctgt 62
          |||||||||| || ||| | ||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 12 ggtggggattggtggcattacttgtgttagatataaagtattgcacttgtcccggcctga 71

                
Query: 63 ggaaga 68
          ||||||
Sbjct: 72 ggaaga 77




>RF00464;mir-92;AAGW01169230.1/2308-2388 9986:Oryctolagus
          cuniculus (rabbit)
          Length = 81

 Score = 71.9 bits (36), Expect = 9e-13
 Identities = 58/64 (90%), Gaps = 1/64 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  ggtggggatttgttgcactgcttgtgttatata-taaagtattgcacttgtcccggcctg 61
          ||||||||||||| ||| | |||||||| |||  ||||||||||||||||||||||||||
Sbjct: 12 ggtggggatttgtcgcattacttgtgttctatggtaaagtattgcacttgtcccggcctg 71

              
Query: 62 tgga 65
          ||||
Sbjct: 72 tgga 75




>RF00464;mir-92;AACZ02222074.1/3149-3227 9598:Pan troglodytes
          (chimpanzee)
          Length = 79

 Score = 69.9 bits (35), Expect = 4e-12
 Identities = 57/63 (90%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgggtggggatttgttgcactgcttgtgttatatataaagtattgcacttgtcccggcct 60
          ||||||||||||||||||| | ||||||||  | | ||||||||||||||||||||||||
Sbjct: 10 tgggtggggatttgttgcattacttgtgttccaca-aaagtattgcacttgtcccggcct 68

             
Query: 61 gtg 63
          |||
Sbjct: 69 gtg 71




>RF00464;mir-92;ABQF01018395.1/1757-1837 59729:Taeniopygia guttata
          Length = 81

 Score = 67.9 bits (34), Expect = 1e-11
 Identities = 59/66 (89%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgggtggggatttgttgcactgcttgt-gttatatataaagtattgcacttgtcccggcc 59
          ||||||||||||||||||| | ||||| | | ||| || |||||||||||||||||||||
Sbjct: 10 tgggtggggatttgttgcattacttgtagctgtatgtagagtattgcacttgtcccggcc 69

                
Query: 60 tgtgga 65
          ||||||
Sbjct: 70 tgtgga 75




>RF00464;mir-92;AAIY01238597.1/3124-3045 9371:Echinops telfairi
          (small Madagascar hedgehog)
          Length = 80

 Score = 63.9 bits (32), Expect = 2e-10
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgggtggggatttgttgcactgcttgtgttatatataaagtattgcacttgtcccggcct 60
          |||||||||||| | |||| | |||||||  | | | |||||||||||||||||||||||
Sbjct: 10 tgggtggggattgggtgcattacttgtgtcctgtgtgaagtattgcacttgtcccggcct 69

                  
Query: 61 gtggaaga 68
          ||||||||
Sbjct: 70 gtggaaga 77




>RF00464;mir-92;ABRQ01318667.1/1002-921 9813:Procavia capensis
          (cape rock hyrax)
          Length = 82

 Score = 63.9 bits (32), Expect = 2e-10
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                  
Query: 29 ttatatataaagtattgcacttgtcccggcctgtggaaga 68
          ||||||||| |||||||||||||||||||||| |||||||
Sbjct: 40 ttatatatatagtattgcacttgtcccggcctatggaaga 79




>RF00464;mir-92;ABQO010442129.1/1114-1031 9315:Macropus eugenii
          (tammar wallaby)
          Length = 84

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 39 agtattgcacttgtcccggcctgtgga 65
          |||||||||||||||||||||||||||
Sbjct: 52 agtattgcacttgtcccggcctgtgga 78




>RF00464;mir-92;AAFR03056382.1/2360-2443 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 84

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 39 agtattgcacttgtcccggcctgtgga 65
          |||||||||||||||||||||||||||
Sbjct: 52 agtattgcacttgtcccggcctgtgga 78




>RF00464;mir-92;AAWZ01041388.1/1227-1308 28377:Anolis carolinensis
          (green anole)
          Length = 82

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 39 agtattgcacttgtcccggcctgtgga 65
          |||||||||||||||||||||||||||
Sbjct: 50 agtattgcacttgtcccggcctgtgga 76




>RF00464;mir-92;CAAK05051440.1/15632-15557 7955:Danio rerio
          (zebrafish)
          Length = 76

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 38 aagtattgcacttgtcccggcctgtg 63
          ||||||||||||||||||||||||||
Sbjct: 43 aagtattgcacttgtcccggcctgtg 68




>RF00464;mir-92;CAAB01000095.1/4670-4593 31033:Takifugu rubripes
          Length = 78

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 40 gtattgcacttgtcccggcctgtgga 65
          ||||||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgtgga 72




>RF00464;mir-92;CAAB01003114.1/24863-24787 31033:Takifugu rubripes
          Length = 77

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 40 gtattgcacttgtcccggcctgtg 63
          ||||||||||||||||||||||||
Sbjct: 46 gtattgcacttgtcccggcctgtg 69




>RF00464;mir-92;CT033786.13/50148-50227 10090:Mus musculus (house
          mouse)
          Length = 80

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 gtattgcacttgtcccggcctgt 62
          |||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctgt 71




>RF00464;mir-92;AAYZ01184872.1/1157-1234 9978:Ochotona princeps
          (American pika)
          Length = 78

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 gtattgcacttgtcccggcctgt 62
          |||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69




>RF00464;mir-92;AADN02029366.1/34887-34810 9031:Gallus gallus
          (chicken)
          Length = 78

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 gtattgcacttgtcccggcctgt 62
          |||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69




>RF00464;mir-92;CAAK05029381.1/12544-12621 7955:Danio rerio
          (zebrafish)
          Length = 78

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 gtattgcacttgtcccggcctgt 62
          |||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69




>RF00464;mir-92;AANH01005312.1/95223-95146 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 78

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 gtattgcacttgtcccggcctgt 62
          |||||||||||||||||||||||
Sbjct: 47 gtattgcacttgtcccggcctgt 69




>RF00464;mir-92;AANH01000396.1/150776-150700 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 77

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 gtattgcacttgtcccggcctgt 62
          |||||||||||||||||||||||
Sbjct: 46 gtattgcacttgtcccggcctgt 68




>RF00464;mir-92;BAAE01210639.1/1758-1680 8090:Oryzias latipes
          (Japanese medaka)
          Length = 79

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 gtattgcacttgtcccggcctgt 62
          |||||||||||||||||||||||
Sbjct: 48 gtattgcacttgtcccggcctgt 70




>RF00464;mir-92;BAAE01057416.1/1171-1095 8090:Oryzias latipes
          (Japanese medaka)
          Length = 77

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 gtattgcacttgtcccggcctgt 62
          |||||||||||||||||||||||
Sbjct: 46 gtattgcacttgtcccggcctgt 68




>RF00464;mir-92;ABEP02031049.1/2682-2605 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 78

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 39 agtattgcacttgtcccggcct 60
          ||||||||||||||||||||||
Sbjct: 46 agtattgcacttgtcccggcct 67




>RF00464;mir-92;AAGJ02142502.1/20488-20574 7668:Strongylocentrotus
          purpuratus
          Length = 87

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 41 tattgcacttgtcccggcctg 61
          |||||||||||||||||||||
Sbjct: 57 tattgcacttgtcccggcctg 77