miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32704_rno-mir-96:mirbase
Length = 106
Score = 167 bits (84), Expect = 2e-42
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 5 taccgtctgcttggccgactttggcactagcacatttttgcttgtgtctctccgctctga 64
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 taccatctgcttggccgattttggcactagcacatttttgcttgtgtctctccgctctga 64
Query: 65 gcaatcatgtgcagtgccaatatgggaaaagc 96
||||||||||||||||||||||||||||||||
Sbjct: 65 gcaatcatgtgcagtgccaatatgggaaaagc 96
>26671_cfa-mir-96:mirbase
Length = 89
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 11 ctgcttggccgactttggcactagcacatttttgcttgtgtctctccgctctgagcaatc 70
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgcttggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatc 60
Query: 71 atgtgcagtgccaatatgggaaaagc 96
||||||||||||||||||||||||||
Sbjct: 61 atgtgcagtgccaatatgggaaaagc 86
>31823_mmu-mir-96:mirbase
Length = 106
Score = 151 bits (76), Expect = 1e-37
Identities = 88/92 (95%)
Strand = Plus / Plus
Query: 5 taccgtctgcttggccgactttggcactagcacatttttgcttgtgtctctccgctctga 64
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5 taccatctgcttggccgattttggcactagcacatttttgcttgtgtctctccgctgtga 64
Query: 65 gcaatcatgtgcagtgccaatatgggaaaagc 96
||||||||||| ||||||||||||||||||||
Sbjct: 65 gcaatcatgtgtagtgccaatatgggaaaagc 96
>26993_eca-mir-96:mirbase
Length = 78
Score = 147 bits (74), Expect = 2e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 16 tggccgactttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 75
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 60
Query: 76 cagtgccaatatgggaaa 93
||||||||||||||||||
Sbjct: 61 cagtgccaatatgggaaa 78
>27700_mml-mir-96:mirbase
Length = 78
Score = 147 bits (74), Expect = 2e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 16 tggccgactttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 75
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 60
Query: 76 cagtgccaatatgggaaa 93
||||||||||||||||||
Sbjct: 61 cagtgccaatatgggaaa 78
>28200_mne-mir-96:mirbase
Length = 78
Score = 147 bits (74), Expect = 2e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 16 tggccgactttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 75
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 60
Query: 76 cagtgccaatatgggaaa 93
||||||||||||||||||
Sbjct: 61 cagtgccaatatgggaaa 78
>28290_ggo-mir-96:mirbase
Length = 78
Score = 147 bits (74), Expect = 2e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 16 tggccgactttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 75
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 60
Query: 76 cagtgccaatatgggaaa 93
||||||||||||||||||
Sbjct: 61 cagtgccaatatgggaaa 78
>28410_hsa-mir-96:mirbase
Length = 78
Score = 147 bits (74), Expect = 2e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 16 tggccgactttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 75
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 60
Query: 76 cagtgccaatatgggaaa 93
||||||||||||||||||
Sbjct: 61 cagtgccaatatgggaaa 78
>30077_ppa-mir-96:mirbase
Length = 78
Score = 147 bits (74), Expect = 2e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 16 tggccgactttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 75
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 60
Query: 76 cagtgccaatatgggaaa 93
||||||||||||||||||
Sbjct: 61 cagtgccaatatgggaaa 78
>30194_ptr-mir-96:mirbase
Length = 78
Score = 147 bits (74), Expect = 2e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 16 tggccgactttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 75
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 60
Query: 76 cagtgccaatatgggaaa 93
||||||||||||||||||
Sbjct: 61 cagtgccaatatgggaaa 78
>30800_ppy-mir-96:mirbase
Length = 78
Score = 147 bits (74), Expect = 2e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 16 tggccgactttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 75
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggccgattttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 60
Query: 76 cagtgccaatatgggaaa 93
||||||||||||||||||
Sbjct: 61 cagtgccaatatgggaaa 78
>27363_mdo-mir-96:mirbase
Length = 97
Score = 131 bits (66), Expect = 1e-31
Identities = 87/94 (92%)
Strand = Plus / Plus
Query: 9 gtctgcttggccgactttggcactagcacatttttgcttgtgtctctccgctctgagcaa 68
|||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 4 gtctgcttggcccgttttggcactagcacatttttgcttctgtctctctgctctgagcaa 63
Query: 69 tcatgtgcagtgccaatatgggaaaagcaggatg 102
||||||| ||||||||||||||||||||| ||||
Sbjct: 64 tcatgtgtagtgccaatatgggaaaagcaagatg 97
>31468_oan-mir-96:mirbase
Length = 109
Score = 127 bits (64), Expect = 2e-30
Identities = 82/88 (93%)
Strand = Plus / Plus
Query: 9 gtctgcttggccgactttggcactagcacatttttgcttgtgtctctccgctctgagcaa 68
|||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 9 gtctgcttggcctcttttggcactagcacatttttgcttttgtctctctgctctgagcaa 68
Query: 69 tcatgtgcagtgccaatatgggaaaagc 96
||||||| ||||||||||||||||||||
Sbjct: 69 tcatgtgtagtgccaatatgggaaaagc 96
>27609_sla-mir-96:mirbase
Length = 76
Score = 125 bits (63), Expect = 7e-30
Identities = 75/78 (96%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 16 tggccgactttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtg 75
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 tggccgattttggcactagcacatttttgcttgt--ctctccgctctgagcaatcatgtg 58
Query: 76 cagtgccaatatgggaaa 93
||||||||||||||||||
Sbjct: 59 cagtgccaatatgggaaa 76
>34578_fru-mir-96:mirbase
Length = 102
Score = 56.0 bits (28), Expect = 5e-09
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 24 tttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtgcagtgcca 83
|||||||||||||||||||||||| ||| | | || |||||||| ||||| |||||||
Sbjct: 16 tttggcactagcacatttttgcttctgtatgtatactttgagcaattatgtgtagtgcca 75
Query: 84 atat 87
||||
Sbjct: 76 atat 79
>34725_tni-mir-96:mirbase
Length = 78
Score = 56.0 bits (28), Expect = 5e-09
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 24 tttggcactagcacatttttgcttgtgtctctccgctctgagcaatcatgtgcagtgcca 83
|||||||||||||||||||||||| ||| | | || |||||||| ||||| |||||||
Sbjct: 9 tttggcactagcacatttttgcttctgtatatatactttgagcaattatgtgtagtgcca 68
Query: 84 atat 87
||||
Sbjct: 69 atat 72
>25752_xtr-mir-96:mirbase
Length = 75
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 23 ctttggcactagcacatttttgctt 47
|||||||||||||||||||||||||
Sbjct: 7 ctttggcactagcacatttttgctt 31
>34260_dre-mir-96:mirbase
Length = 125
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 24 tttggcactagcacatttttgctt 47
||||||||||||||||||||||||
Sbjct: 24 tttggcactagcacatttttgctt 47
>24671_bfl-mir-96:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 tttggcactagcacatttttgct 46
|||||||||||||||||||||||
Sbjct: 21 tttggcactagcacatttttgct 43
>34969_isc-mir-96:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 24 tttggcactagcacatttttg 44
|||||||||||||||||||||
Sbjct: 21 tttggcactagcacatttttg 41
