miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00670;mir-105;AAEX02003804.1/918-997 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 143 bits (72), Expect = 4e-34
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtggtcaaatgctcagactccttggtggctgcttatgcaccatggatgtttg 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 tgtgcatcatggtcaaatgctcagactccttggtggctgcttatgcaccatgaatgtttg 60
Query: 61 agcatgtgctatggtgtcta 80
||||||||||||||||||||
Sbjct: 61 agcatgtgctatggtgtcta 80
>RF00670;mir-105;ABRO01195452.1/9888-9808 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 81
Score = 113 bits (57), Expect = 3e-25
Identities = 76/81 (93%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtggtcaaatgctcagactcct-tggtggctgcttatgcaccatggatgttt 59
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 1 tgtgcatcgtggtcaaatgctcagactcctgtggtggctgctcatgcaccacggatgttt 60
Query: 60 gagcatgtgctatggtgtcta 80
|||||| ||| ||||||||||
Sbjct: 61 gagcatatgccatggtgtcta 81
>RF00670;mir-105;AAIY01029761.1/2576-2497 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 89.7 bits (45), Expect = 5e-18
Identities = 74/81 (91%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 1 tgtgcatcgtggtcaaatgctcagactcct-tggtggctgcttatgcaccatggatgttt 59
||||||| |||||||||||||||||||||| | ||||||| || |||||||||||| |||
Sbjct: 1 tgtgcattgtggtcaaatgctcagactcctgttgtggctgtttgtgcaccatggat-ttt 59
Query: 60 gagcatgtgctatggtgtcta 80
||||||||||||||| |||||
Sbjct: 60 gagcatgtgctatggcgtcta 80
>RF00670;mir-105;AANN01683306.1/2545-2466 9365:Erinaceus europaeus
(western European hedgehog)
Length = 80
Score = 73.8 bits (37), Expect = 3e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 8 cgtggtcaaatgctcagactccttggtggctgcttatgcaccatggatgtttgagcatgt 67
||||||||||||||||| |||| |||| | || |||||||||| |||||||||||||| |
Sbjct: 8 cgtggtcaaatgctcaggctccgtggtagttgattatgcaccacggatgtttgagcattt 67
Query: 68 gctatggtgtcta 80
| ||||||||||
Sbjct: 68 acaatggtgtcta 80
>RF00670;mir-105;AABR04012381.1/35187-35107 10116:Rattus
norvegicus (Norway rat)
Length = 81
Score = 67.9 bits (34), Expect = 2e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 31 tggtggctgcttatgcaccatggatgtttgagcatgtgctatggtgtcta 80
||||||||||||||| | || |||||||||||||||||||||||| ||||
Sbjct: 32 tggtggctgcttatgtatcacggatgtttgagcatgtgctatggtatcta 81
>RF00670;mir-105;CAAA01059274.1/4642-4722 10090:Mus musculus
(house mouse)
Length = 81
Score = 65.9 bits (33), Expect = 7e-11
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 31 tggtggctgcttatgcaccatggatgtttgagcatgtgctatggt 75
|||||||||||||||||||| | ||| ||||||||||||||||||
Sbjct: 32 tggtggctgcttatgcaccacgaatgcttgagcatgtgctatggt 76
>RF00670;mir-105;AANG01759982.1/244-164 9685:Felis catus (domestic
cat)
Length = 81
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 31 tggtggctgcttatgcaccatggatgtttga 61
|||||||||||||||||||||||||||||||
Sbjct: 32 tggtggctgcttatgcaccatggatgtttga 62
>RF00670;mir-105;AALT01106831.1/106-184 42254:Sorex araneus
(European shrew)
Length = 79
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 40 cttatgcaccatggatgtttgagcatgtgctatggtgtcta 80
|||||||||| |||||| ||||||||||||||| |||||||
Sbjct: 39 cttatgcaccgtggatgcttgagcatgtgctattgtgtcta 79
>RF00670;mir-105;ABRO01195452.1/8720-8641 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 31 tggtggctgcttatgcaccatggatgtttgagcatg 66
||||||||||||||||||||||||||| ||| ||||
Sbjct: 31 tggtggctgcttatgcaccatggatgtgtgaccatg 66
>RF00670;mir-105;ABRT010308690.1/936-856 9478:Tarsius syrichta
(Philippine tarsier)
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 31 tggtggctgcttatgcaccatggatgtttg 60
|||||||||||||||||||||| |||||||
Sbjct: 33 tggtggctgcttatgcaccatgaatgtttg 62
>RF00670;mir-105;AAWR02040596.1/7734-7654 9796:Equus caballus
(horse)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 9 gtggtcaaatgctcagactcct-tggtggctgcttatgcaccatggatgtttga 61
||||||||||| || |||| || || |||||||| |||||| ||||||||||||
Sbjct: 9 gtggtcaaatgttctgactgctgtgctggctgctcatgcactatggatgtttga 62
