miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27505_age-mir-106b:mirbase
Length = 82
Score = 125 bits (63), Expect = 5e-30
Identities = 78/82 (95%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctgt--gtgctaccgcactgt 58
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgt 60
Query: 59 gggtacttgctgctccggcagg 80
|||||||||||||||| |||||
Sbjct: 61 gggtacttgctgctccagcagg 82
>27614_sla-mir-106b:mirbase
Length = 82
Score = 125 bits (63), Expect = 5e-30
Identities = 78/82 (95%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctgt--gtgctaccgcactgt 58
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgt 60
Query: 59 gggtacttgctgctccggcagg 80
|||||||||||||||| |||||
Sbjct: 61 gggtacttgctgctccagcagg 82
>28298_ggo-mir-106b:mirbase
Length = 82
Score = 125 bits (63), Expect = 5e-30
Identities = 78/82 (95%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctgt--gtgctaccgcactgt 58
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgt 60
Query: 59 gggtacttgctgctccggcagg 80
|||||||||||||||| |||||
Sbjct: 61 gggtacttgctgctccagcagg 82
>28424_hsa-mir-106b:mirbase
Length = 82
Score = 125 bits (63), Expect = 5e-30
Identities = 78/82 (95%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctgt--gtgctaccgcactgt 58
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgt 60
Query: 59 gggtacttgctgctccggcagg 80
|||||||||||||||| |||||
Sbjct: 61 gggtacttgctgctccagcagg 82
>30085_ppa-mir-106b:mirbase
Length = 82
Score = 125 bits (63), Expect = 5e-30
Identities = 78/82 (95%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctgt--gtgctaccgcactgt 58
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgt 60
Query: 59 gggtacttgctgctccggcagg 80
|||||||||||||||| |||||
Sbjct: 61 gggtacttgctgctccagcagg 82
>30205_ptr-mir-106b:mirbase
Length = 82
Score = 125 bits (63), Expect = 5e-30
Identities = 78/82 (95%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctgt--gtgctaccgcactgt 58
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgt 60
Query: 59 gggtacttgctgctccggcagg 80
|||||||||||||||| |||||
Sbjct: 61 gggtacttgctgctccagcagg 82
>30812_ppy-mir-106b:mirbase
Length = 82
Score = 125 bits (63), Expect = 5e-30
Identities = 78/82 (95%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctgt--gtgctaccgcactgt 58
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgt 60
Query: 59 gggtacttgctgctccggcagg 80
|||||||||||||||| |||||
Sbjct: 61 gggtacttgctgctccagcagg 82
>27712_mml-mir-106b:mirbase
Length = 82
Score = 117 bits (59), Expect = 1e-27
Identities = 77/82 (93%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctgt--gtgctaccgcactgt 58
||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1 cctgctggggctaaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgt 60
Query: 59 gggtacttgctgctccggcagg 80
|||||||||||||||| |||||
Sbjct: 61 gggtacttgctgctccagcagg 82
>28206_mne-mir-106b:mirbase
Length = 82
Score = 117 bits (59), Expect = 1e-27
Identities = 77/82 (93%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctgt--gtgctaccgcactgt 58
||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1 cctgctggggctaaagtgctgacagtgcagatagtggtcctctccgtgctaccgcactgt 60
Query: 59 gggtacttgctgctccggcagg 80
|||||||||||||||| |||||
Sbjct: 61 gggtacttgctgctccagcagg 82
>27567_lla-mir-106b:mirbase
Length = 81
Score = 109 bits (55), Expect = 3e-25
Identities = 77/82 (93%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctgt--gtgctaccgcactgt 58
||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct: 1 cctgccggggctaaagtgctgacagtgcagatagt-gtcctctccgtgctaccgcactgt 59
Query: 59 gggtacttgctgctccggcagg 80
|||||||||||||||| |||||
Sbjct: 60 gggtacttgctgctccagcagg 81
>31835_mmu-mir-106b:mirbase
Length = 82
Score = 109 bits (55), Expect = 3e-25
Identities = 76/82 (92%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctgt--gtgctaccgcactgt 58
||||| ||| ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1 cctgctgggactaaagtgctgacagtgcagatagtggtcctctctgtgctaccgcactgt 60
Query: 59 gggtacttgctgctccggcagg 80
|||||||||||||||| |||||
Sbjct: 61 gggtacttgctgctccagcagg 82
>32714_rno-mir-106b:mirbase
Length = 82
Score = 109 bits (55), Expect = 3e-25
Identities = 76/82 (92%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 cctgccggggctaaagtgctgacagtgcagatagtggtcctgt--gtgctaccgcactgt 58
||||| ||| ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1 cctgctgggactaaagtgctgacagtgcagatagtggtcctctctgtgctaccgcactgt 60
Query: 59 gggtacttgctgctccggcagg 80
|||||||||||||||| |||||
Sbjct: 61 gggtacttgctgctccagcagg 82
>26683_cfa-mir-106b:mirbase
Length = 59
Score = 93.7 bits (47), Expect = 2e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 12 taaagtgctgacagtgcagatagtggtcctgtgtgctaccgcactgtgggtacttgctg 70
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 1 taaagtgctgacagtgcagatagcggtcctccgtgctaccgcactgtgggtacttgctg 59
>27003_eca-mir-106b:mirbase
Length = 59
Score = 79.8 bits (40), Expect = 3e-16
Identities = 55/59 (93%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 12 taaagtgctgacagtgcagatagtggtcctgt--gtgctaccgcactgtgggtacttgc 68
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 1 taaagtgctgacagtgcagatagtggtcctctccatgctaccgcactgtgggtacttgc 59
