miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32720_rno-mir-125a:mirbase
Length = 85
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 1 tgccggcctctgcgtccctgagaccctttaacctgtgaggacgtccagggtcacaggtga 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgccggcctctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtga 60
Query: 61 ggttcttgggagcctggcg 79
|||||||||||||||||||
Sbjct: 61 ggttcttgggagcctggcg 79
>32721_rno-mir-125a:mirbase
Length = 85
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 1 tgccggcctctgcgtccctgagaccctttaacctgtgaggacgtccagggtcacaggtga 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgccggcctctgggtccctgagaccctttaacctgtgaggacgtccagggtcacaggtga 60
Query: 61 ggttcttgggagcctggcg 79
|||||||||||||||||||
Sbjct: 61 ggttcttgggagcctggcg 79
>33970_ssc-mir-125a:mirbase
Length = 80
Score = 143 bits (72), Expect = 2e-35
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 5 ggcctctgcgtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggtt 64
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 ggcctctgagtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggtt 60
Query: 65 cttgggagcctggcgtccgg 84
||||||||||||||||||||
Sbjct: 61 cttgggagcctggcgtccgg 80
>27717_mml-mir-125a:mirbase
Length = 86
Score = 133 bits (67), Expect = 2e-32
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 8 ctctgcgtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttctt 67
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 8 ctctgggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttctt 67
Query: 68 gggagcctggcgtccggcc 86
|||||||||||||| ||||
Sbjct: 68 gggagcctggcgtctggcc 86
>27718_mml-mir-125a:mirbase
Length = 86
Score = 133 bits (67), Expect = 2e-32
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 8 ctctgcgtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttctt 67
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 8 ctctgggtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttctt 67
Query: 68 gggagcctggcgtccggcc 86
|||||||||||||| ||||
Sbjct: 68 gggagcctggcgtctggcc 86
>28430_hsa-mir-125a:mirbase
Length = 86
Score = 129 bits (65), Expect = 3e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggagc 73
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 14 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 73
Query: 74 ctggcgtccggcc 86
|||||||| ||||
Sbjct: 74 ctggcgtctggcc 86
>28431_hsa-mir-125a:mirbase
Length = 86
Score = 129 bits (65), Expect = 3e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggagc 73
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 14 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 73
Query: 74 ctggcgtccggcc 86
|||||||| ||||
Sbjct: 74 ctggcgtctggcc 86
>30817_ppy-mir-125a:mirbase
Length = 86
Score = 129 bits (65), Expect = 3e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggagc 73
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 14 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 73
Query: 74 ctggcgtccggcc 86
|||||||| ||||
Sbjct: 74 ctggcgtctggcc 86
>30818_ppy-mir-125a:mirbase
Length = 86
Score = 129 bits (65), Expect = 3e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggagc 73
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 14 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 73
Query: 74 ctggcgtccggcc 86
|||||||| ||||
Sbjct: 74 ctggcgtctggcc 86
>31841_mmu-mir-125a:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggagc 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggagc 64
Query: 74 ctgg 77
||||
Sbjct: 65 ctgg 68
>31842_mmu-mir-125a:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggagc 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggagc 64
Query: 74 ctgg 77
||||
Sbjct: 65 ctgg 68
>30209_ptr-mir-125a:mirbase
Length = 85
Score = 121 bits (61), Expect = 8e-29
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggagc 73
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 13 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 72
Query: 74 ctggcgtccggcc 86
|||| ||| ||||
Sbjct: 73 ctggtgtctggcc 85
>27009_eca-mir-125a:mirbase
Length = 68
Score = 119 bits (60), Expect = 3e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggagc 73
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 5 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 64
Query: 74 ctgg 77
||||
Sbjct: 65 ctgg 68
>27010_eca-mir-125a:mirbase
Length = 68
Score = 119 bits (60), Expect = 3e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggagc 73
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 5 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagc 64
Query: 74 ctgg 77
||||
Sbjct: 65 ctgg 68
>26689_cfa-mir-125a:mirbase
Length = 60
Score = 111 bits (56), Expect = 8e-26
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 15 tccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttgggagcc 74
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 tccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggttcttgggagcc 60
>34278_dre-mir-125a-2:mirbase
Length = 107
Score = 61.9 bits (31), Expect = 7e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 9 tctgcgtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttg 68
|||| ||||||||||||||| ||||||||| | | |||| ||||||||||||||| ||||
Sbjct: 23 tctgtgtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttg 81
Query: 69 gga 71
|||
Sbjct: 82 gga 84
>34735_tni-mir-125a:mirbase
Length = 63
Score = 52.0 bits (26), Expect = 6e-08
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttggga 71
||||||||||||||| ||||||||| |||| | ||||||||||||||| |||||||
Sbjct: 5 gtccctgagaccctt-aacctgtgataacgtgaaaggtcacaggtgaggtccttggga 61
>34588_fru-mir-125a:mirbase
Length = 66
Score = 44.1 bits (22), Expect = 2e-05
Identities = 50/58 (86%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttggga 71
||||||||||||||| ||||||||| || | | ||||||||||||||| |||||||
Sbjct: 8 gtccctgagaccctt-aacctgtgatgatatgaaaggtcacaggtgaggtccttggga 64
>25764_xtr-mir-125a:mirbase
Length = 62
Score = 42.1 bits (21), Expect = 6e-05
Identities = 46/53 (86%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttct 66
||||||||||||| |||||||||||||| | | |||||||||||||||||
Sbjct: 1 gtccctgagaccc-ttaacctgtgaggaagacatatgtcacaggtgaggttct 52
>34277_dre-mir-125a-1:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgagg 40
||||||||||||| |||||||||||||
Sbjct: 13 gtccctgagaccc-ttaacctgtgagg 38
