miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00052;lin-4;ABRQ01276450.1/576-508 9813:Procavia capensis (cape
rock hyrax)
Length = 69
Score = 121 bits (61), Expect = 2e-27
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 9 tctgcgtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttg 68
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 tctgggtccctgagaccctttaacctgtgaggatgtccagggtcacaggtgaggttcttg 60
Query: 69 ggagcctgg 77
|||||||||
Sbjct: 61 ggagcctgg 69
>RF00052;lin-4;AAWZ01007717.1/33048-32980 28377:Anolis
carolinensis (green anole)
Length = 69
Score = 69.9 bits (35), Expect = 5e-12
Identities = 55/59 (93%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgaggacgtccag-ggtcacaggtgaggttcttggga 71
||||||||||||||| |||||||||||| | |||| |||||||||||||||||||||||
Sbjct: 6 gtccctgagaccctt-aacctgtgaggaagcccagaggtcacaggtgaggttcttggga 63
>RF00052;lin-4;BX005154.6/49745-49678 7955:Danio rerio (zebrafish)
Length = 68
Score = 61.9 bits (31), Expect = 1e-09
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 9 tctgcgtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttg 68
|||| ||||||||||||||| ||||||||| | | |||| ||||||||||||||| ||||
Sbjct: 1 tctgtgtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttg 59
Query: 69 gga 71
|||
Sbjct: 60 gga 62
>RF00052;lin-4;CAAE01015022.1/41722-41789 99883:Tetraodon
nigroviridis
Length = 68
Score = 52.0 bits (26), Expect = 1e-06
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 14 gtccctgagaccctttaacctgtgaggacgtccagggtcacaggtgaggttcttggga 71
||||||||||||||| ||||||||| |||| | ||||||||||||||| |||||||
Sbjct: 6 gtccctgagaccctt-aacctgtgataacgtgaaaggtcacaggtgaggtccttggga 62
